Pairwise Alignments

Query, 309 a.a., ABC transporter, substrate binding protein (ribose) from Agrobacterium fabrum C58

Subject, 296 a.a., ribose ABC transporter substrate-binding protein RbsB from Escherichia coli ECRC62

 Score =  154 bits (388), Expect = 3e-42
 Identities = 100/292 (34%), Positives = 157/292 (53%), Gaps = 4/292 (1%)

Query: 8   LTSAALLALSLGSANAAEVKKIGLAVANLQANFFNQIKQAVEAEAKTRGIAVVTVDAKGD 67
           L SA  L+ ++ SANA     I L V+ L   FF  +K   + EA   G  +V +D++ +
Sbjct: 9   LVSAVALSATV-SANAMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNN 67

Query: 68  GPTQVNQIQDLLTQNIDALIYIPAGAAAATVPVKLAKAAGVPVINIDRNADGAPGDTFLA 127
              ++  +QDL  +    L+  P  + A    VK+A  A +PVI +DR A      + +A
Sbjct: 68  PAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIA 127

Query: 128 TDSVASAKSVCDYIIKQAGGAGKMVIIHGQKGTTPEVDRTKGCMESVKANSGVKIVAEQW 187
           +D+V   K   DYI K+AG   K++ + G  GT+   +R +G  ++V A+    ++A Q 
Sbjct: 128 SDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHK-FNVLASQP 186

Query: 188 SNMWSQDEGFQIMQNMLQANPDVSIVFAQADGLALGAAQAIKVANPSQKIVVGGFDGDTA 247
           ++ + + +G  +MQN+L A+PDV  VFAQ D +ALGA +A++ A  S  +VV GFDG   
Sbjct: 187 AD-FDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVV-GFDGTPD 244

Query: 248 ALEALKNGVFDVTATQQTQKMGRMAVEMAVKIVGGEKVPAVQLSDATLTTKE 299
             +A+ +G    T  Q   ++G   VE A K++ GEKV A    D  L  K+
Sbjct: 245 GEKAVNDGKLAATIAQLPDQIGAKGVETADKVLKGEKVQAKYPVDLKLVVKQ 296