Pairwise Alignments

Query, 1165 a.a., transcription-repair coupling factor from Agrobacterium fabrum C58

Subject, 1159 a.a., transcription-repair coupling factor from Magnetospirillum magneticum AMB-1

 Score = 1233 bits (3191), Expect = 0.0
 Identities = 633/1150 (55%), Positives = 821/1150 (71%), Gaps = 13/1150 (1%)

Query: 19   IGNVPSGMEALLLADMARAGTS---VAYVMSDGQRVADLEQILGFVAPDIPVLTLPAWDC 75
            +   P G +ALLLA++A  G +   + +V  D  R+A + + L F APD+ VL  P WDC
Sbjct: 16   LAGAPEGRDALLLAELAAGGCAQGGILHVARDEGRMARVAEALAFFAPDLQVLEFPGWDC 75

Query: 76   LPYDRVSPSADTSARRLAALAGLINHAKKPHPAVVLVTVNAMLQKMAPRDVIESLGFSAR 135
            +PYDRVSP  D  ARR+  LA L +  K     VVL TV  + Q++ PR+ + S    AR
Sbjct: 76   VPYDRVSPHVDMVARRIDTLARLADGVKGAF--VVLTTVPGLAQRVPPREALASATLDAR 133

Query: 136  PGNQIRMEDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGTEEPVRLDFFGDTLES 195
             G+++ M+ +   L +NG+ R  TV E GE+AVRGGI+D++ PG+ EP+RLDFFGD ++S
Sbjct: 134  KGSRLSMDKLIGFLSKNGYVRADTVMEPGEYAVRGGIVDLYPPGSAEPLRLDFFGDEIDS 193

Query: 196  IRTFDPASQRTIAQARSLDLNPMSEVTLTPDTIGRFRKNYLSLFGAATRDDALYQAVSEG 255
            +R+FDP SQRT          P+SEV L   +I RFR NY  +FG  +  D LY+A+SEG
Sbjct: 194  VRSFDPMSQRTTGPMAGFVCRPVSEVGLDDASIARFRTNYREMFGVISGPDPLYEAISEG 253

Query: 256  RRYAGMEHWLPLFYEQLETAFDYLKGFRIVTDHTAKEAAKERSKLVLDYYEARRASGETK 315
             ++ GMEHWLPLF++ L+T F Y+    +V DH + EA   R  LVL+Y++AR       
Sbjct: 254  IKFNGMEHWLPLFHDGLDTLFAYVPEAAVVLDHQSDEALTARHALVLEYFDARAGLAGAG 313

Query: 316  GSTQGAPYKPVSPGQIYLDGKSFEAALASVNAVRLTPFNEHDSEGRPVATLDAHVGPRWA 375
             +  G  Y P+ P ++YL+   ++  LA+   + L+PF+  + +   V       G R  
Sbjct: 314  LTESGMVYHPILPERLYLERAEWDRLLAARPVLHLSPFDAVEGDEGAV-----DAGGRLG 368

Query: 376  RPPTEGDSEERVNVFDLAVKHIAERRAKGWKVLITGWSEGSLDRLLQVLNEHGLEKIKPV 435
            R   +  +   VNV+D   +H  E+   G +V+I  W++GS DRL  VL +HG++ I+ V
Sbjct: 369  RDFADMRARPGVNVYDCVREHAEEQAKAGRRVVIAAWTQGSRDRLAGVLRDHGIKGIETV 428

Query: 436  TSLKEVKKLGKGEAACAVLSLEAGFETGTLAVIGEQDILGDRMVRRSKRRKRGADFIAEV 495
             S  E + L KG  A AVL L+ GF T  LAVI EQDILGDR+ R ++++K+GA FIAE 
Sbjct: 429  ESWAEAQGLDKGRVAVAVLGLDHGFATPDLAVITEQDILGDRLARPARKKKKGAQFIAEA 488

Query: 496  AGLDEGSLVVHAEHGIGRFVGLQTIEAAGAPRACLELHYADDAKLFLPVENIDLLSRYGS 555
            + L EG LVVH EHGIGR+ GL  +E +GAP  CL + Y    KLF+PVENID+L+R+GS
Sbjct: 489  SALAEGDLVVHVEHGIGRYDGLVALEVSGAPHDCLRVLYDGGDKLFVPVENIDVLTRFGS 548

Query: 556  DAAEATLDKLGGGAWQMRKAKLKKRLLDMADELIRIAAARLVRHAPALIAPDGLYDEFAA 615
            + A  +LDKLGG AWQ RKAKLKKR+ D+AD+LI IAA R +R   AL+  +GLYDEF A
Sbjct: 549  EQAGVSLDKLGGTAWQARKAKLKKRIRDIADQLIGIAAQRKMRQGEALVPAEGLYDEFCA 608

Query: 616  RFPYDETEDQLNAIEAVRDDLGAGRPMDRLICGDVGFGKTEVALRAAFLAAMNGVQVAVV 675
            RFP+ ETEDQ+ AIE    DL +G+PMDRLICGDVGFGKTEVA+R AF+AA+ G+QVAVV
Sbjct: 609  RFPFAETEDQMRAIEDSIADLASGKPMDRLICGDVGFGKTEVAMRVAFVAALQGLQVAVV 668

Query: 676  VPTTLLARQHFRTFSERFRGLPIRVQQASRLVGSKELALTKKEVAEGKTDIVVGTHALLG 735
            VPTTLLARQH+RTF ERF GLP+RV+Q SRLV +K  +  K  VA+G  D+VVGTHALL 
Sbjct: 669  VPTTLLARQHYRTFKERFSGLPVRVEQLSRLVTAKTASEVKAGVADGSVDVVVGTHALLA 728

Query: 736  AGISFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGVRELSL 795
             GI F  LGLLIIDEEQHFGV HKERLK+LK+DVHVLTL+ATPIPRTLQ+A++GV+E+S+
Sbjct: 729  KGIGFKRLGLLIIDEEQHFGVAHKERLKQLKADVHVLTLTATPIPRTLQMALSGVKEMSV 788

Query: 796  ITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSFYVCPRLADLADIHAFLQSDVPE 855
            I TPP+DR+AVRTF+ P+DP+V+RE+++RE YRGGQ FYVCPRLAD+  +   L   VPE
Sbjct: 789  IATPPIDRLAVRTFVLPYDPVVLRESILRERYRGGQVFYVCPRLADIDRVAERLAKLVPE 848

Query: 856  LKVAVAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVESGLDVPTANTLIVHRADMFGLAQ 915
            +K AVAHG++A  +LE++M AF + +YDVLLST I+ESG+D+P+ NTLI+HRADMFGL Q
Sbjct: 849  VKTAVAHGRLAPADLEEVMVAFGEKQYDVLLSTNIIESGIDMPSVNTLIIHRADMFGLGQ 908

Query: 916  LYQLRGRVGRSKVRAFALFTLPVNKVLTTMAERRLKVLQSLDTLGAGFQLASHDLDIRGA 975
            LYQLRGRVGR K R +A FTLP +KVL+  AE+RL+V+Q+LDTLGAGFQLASHDLDIRGA
Sbjct: 909  LYQLRGRVGRGKTRGYAYFTLPNDKVLSKAAEKRLQVMQALDTLGAGFQLASHDLDIRGA 968

Query: 976  GNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGDE--EVRDSGWSPQISVGTSVMIPEDY 1033
            GNLLGEEQSGHI+EVG ELYQQ+LEEAVA  KG +  E  +  WSPQI+VGT V+IPE Y
Sbjct: 969  GNLLGEEQSGHIREVGVELYQQLLEEAVAAAKGGQGGEAAEE-WSPQIAVGTPVLIPETY 1027

Query: 1034 VPDLHLRMGLYRRLGELADISEIDGFGAEMIDRFGPLPKEVQHLLKIVYIKSLCRTANVE 1093
            V DL +R+ LYRR+G LAD +EI+   AE+IDRFG LP EV++LL++V IK+LC+ A ++
Sbjct: 1028 VADLSVRLSLYRRIGSLADQAEIEALAAELIDRFGKLPPEVENLLEVVAIKALCKLAGID 1087

Query: 1094 KVDAGPKGVVVQFRNKEFPNPAALVGYIGKQGSMAKIRPDHSLFLNRDLPTPEKRLTGAA 1153
            KVD+GPKG VV  R   F NPAALV +I +     KIRPDH +   R    P++R+ G  
Sbjct: 1088 KVDSGPKGAVVSLRGNVFANPAALVQFIARSAGSCKIRPDHKIVFLRAWEDPKQRIVGLR 1147

Query: 1154 MVMTQLAELA 1163
             V+ +LAELA
Sbjct: 1148 NVIGKLAELA 1157