Pairwise Alignments

Query, 1165 a.a., transcription-repair coupling factor from Agrobacterium fabrum C58

Subject, 1140 a.a., transcription-repair coupling factor from Kangiella aquimarina DSM 16071

 Score =  705 bits (1820), Expect = 0.0
 Identities = 428/1114 (38%), Positives = 626/1114 (56%), Gaps = 59/1114 (5%)

Query: 28   ALLLADMARAGTSVAYVMSDG-----QRVADLEQILGFVAPDIPVLTLPAWDCLPYDRVS 82
            AL  A +A        V+SD      Q   +++  LG  + DIPV+  P W+ LPYD  S
Sbjct: 27   ALAFAKLAEQREQPIVVISDDTPALWQLQKEIQYFLGKDS-DIPVMVFPDWETLPYDNFS 85

Query: 83   PSADTSARRLAALAGLINHAKKPHPAVVLVTVNAMLQKMAPRDVIESLGFSARPGNQIRM 142
            P  D  + RL  L  L     +    +VL+ VN +L K+ P++ IE        G ++ M
Sbjct: 86   PHQDIVSERLLTLYNL----PRLKHGIVLIAVNTLLLKLPPQEYIEQNSLIVHTGQKLDM 141

Query: 143  EDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGTEEPVRLDFFGDTLESIRTFDPA 202
             ++    E +G+  V  V   GE+AVRG ILDVF  G+E+P+RLDFF D ++SIR FDP 
Sbjct: 142  HEVRKLFEESGYHSVNQVFSHGEYAVRGSILDVFPMGSEKPLRLDFFDDEIDSIRYFDPE 201

Query: 203  SQRTIAQARSLDLNPMSEVTLTPDTIGRFRKNYLSLFGAATRDDALYQAVSEGRRYAGME 262
            SQ +  + +  +L P  E  L  + I  FR+N+ + F    +   LYQ VS G   AG+E
Sbjct: 202  SQLSDQKIQKFELLPAKEFPLDDEGIATFRQNFRAEFEVNLQRVWLYQEVSNGNSPAGIE 261

Query: 263  HWLPLFYEQLETAFDYLKGFRIVT---DHTAKEAAKERSKLVLDYYEARRASGETKGSTQ 319
            ++LPLF+EQL+T FDYL    ++    DH     A+     + + YE RR   E      
Sbjct: 262  YYLPLFFEQLDTFFDYLPQQSLICTLGDHQLH--AEHYWDEITERYEQRRHDIE------ 313

Query: 320  GAPYKPVSPGQIYLDGKSFEAALASVNAVRLTPFNEHDSEGRPVATLDAHVGPRWARPPT 379
                +P+      L+ K    A   +N+        H  + RP A   A   P  A    
Sbjct: 314  ----RPI------LEPKKLYLAADELNSQLKQHIRIHIKQERPDADYQASPMPMMA---I 360

Query: 380  EGDSEERVNVFDLAVKHIAERRAKGW--KVLITGWSEGSLDRLLQVLNEHGLEK--IKPV 435
            +  +++ VN F   +K         W  +  I   S G  + L  +L+ + ++   ++  
Sbjct: 361  DHKAKDPVNQFRSFLKQ--------WTGQCFIATESPGRREALKDLLSRNEIQASVVEHW 412

Query: 436  TSLKEVKKLGKGEAACAVLSLEAGFETGTLAVIGEQDILGDRMVRRSKRRKRGAD----F 491
            +   + K L  G     V  L  GF    LAV+ E ++ G+ +++  +R  + AD     
Sbjct: 413  SEASDSKNLVIG-----VAPLSKGFALSDLAVVTETELFGENVIKTRRRDTKAADQAEDM 467

Query: 492  IAEVAGLDEGSLVVHAEHGIGRFVGLQTIEAAGAPRACLELHYADDAKLFLPVENIDLLS 551
            I  +A L EG  VVH E GIGR+ GL  +E+       L + YA   KL++PV+++ L+ 
Sbjct: 468  IRNLAELKEGDPVVHIEQGIGRYRGLVKLESGDIEAEYLMIEYAGGDKLYMPVQSLHLIG 527

Query: 552  RY-GSDAAEATLDKLGGGAWQMRKAKLKKRLLDMADELIRIAAARLVRHAPALIAPDGLY 610
            RY G++   A   KLG   W   + K  ++  D+A EL+ I A R  +        +  Y
Sbjct: 528  RYSGTNPELAPWHKLGTEQWDKARQKAAEKARDVAAELLDIYARRAAKEGIQYQLDEAEY 587

Query: 611  DEFAARFPYDETEDQLNAIEAVRDDLGAGRPMDRLICGDVGFGKTEVALRAAFLAAMNGV 670
              F A F ++ET DQ  AI AV  D+ +  PMDRL+CGDVGFGKTEVALRAAF+AA +G 
Sbjct: 588  RRFCAEFAFEETVDQTTAINAVIRDMTSHLPMDRLVCGDVGFGKTEVALRAAFIAAQSGK 647

Query: 671  QVAVVVPTTLLARQHFRTFSERFRGLPIRVQQASRLVGSKELALTKKEVAEGKTDIVVGT 730
            QVAV+VPTTLLA+QHF TFS+RF   P++V   SR   +KE+  T K + +G  DIVVGT
Sbjct: 648  QVAVLVPTTLLAQQHFETFSDRFADWPMKVASLSRFATNKEVQATLKGLEDGTVDIVVGT 707

Query: 731  HALLGAGISFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAMTGV 790
            H L+   + F  LGLLIIDEE  FGV+ KE+LK+ +++V +LTL+ATPIPRTL ++M+G+
Sbjct: 708  HKLIQQDVKFKRLGLLIIDEEHRFGVRQKEQLKKFRTEVDILTLTATPIPRTLNMSMSGM 767

Query: 791  RELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSFYVCPRLADLADIHAFLQ 850
            R+LS+I TPP  R++V+TF+  +   +IRE ++RE  RGGQ +++   +  +      LQ
Sbjct: 768  RDLSIIATPPARRLSVKTFVREYHKPLIREAVLREILRGGQVYFLHNAVDTIQRTLEELQ 827

Query: 851  SDVPELKVAVAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVESGLDVPTANTLIVHRADM 910
              +PE ++ +AHGQM   ELE +M  FY  +++VL+ TTIVE+G+D P ANT+I+ RAD 
Sbjct: 828  ELLPEARIQLAHGQMRERELEQVMRDFYHQRFNVLVCTTIVETGIDNPNANTMIIDRADK 887

Query: 911  FGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTTMAERRLKVLQSLDTLGAGFQLASHDL 970
            FGLAQL+QLRGRVGRS  +A+A    P  + +T  AE+RL  + SL+ LGAGF LA+HDL
Sbjct: 888  FGLAQLHQLRGRVGRSHHQAYAYLLTPAGRKITKDAEKRLDAIASLEDLGAGFTLATHDL 947

Query: 971  DIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGDEE---VRDSGWSPQISVGTSV 1027
            +IRGAG LLG+EQSG ++ VGF LY  MLE+AV  +K  +E    +      +I +    
Sbjct: 948  EIRGAGELLGDEQSGQMQAVGFNLYMDMLEDAVKALKDGKEPSLQQSLKQKTEIDLSVPA 1007

Query: 1028 MIPEDYVPDLHLRMGLYRRLGELADISEIDGFGAEMIDRFGPLPKEVQHLLKIVYIKSLC 1087
            +IP+DY+ D+  R+ LY+R+       ++D    E IDRFG LP+ +++L  +  +    
Sbjct: 1008 LIPDDYIGDVATRLSLYKRIANAKTKEQLDALQVEFIDRFGLLPEALKNLFTLTELALRV 1067

Query: 1088 RTANVEKVDAGPKGVVVQFRNKEFPNPAALVGYI 1121
            +   + K+D    G+ ++F      +P  L+  I
Sbjct: 1068 QPLGISKIDLVKTGIRIRFTQDTQIDPGKLIRLI 1101