Pairwise Alignments

Query, 1165 a.a., transcription-repair coupling factor from Agrobacterium fabrum C58

Subject, 1148 a.a., transcription-repair coupling factor from Erwinia amylovora T8

 Score =  701 bits (1809), Expect = 0.0
 Identities = 426/1114 (38%), Positives = 634/1114 (56%), Gaps = 45/1114 (4%)

Query: 64   DIPVLTLPAWDCLPYDRVSPSADTSARRLAALAGLINHAKKPHPAVVLVTVNAMLQKMAP 123
            D PV+ L  W+ LP+D  SP  +  + RL+ L  L   A      ++++ VN ++Q++ P
Sbjct: 64   DQPVMALADWETLPFDSFSPHQEIISSRLSTLYQLPTLAS----GILILPVNTLMQRVCP 119

Query: 124  RDVIESLGFSARPGNQIRMEDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGTEEP 183
             + +       + G ++  + + ++LE+ G+  V  V   GEFA RG +LD++  G+E P
Sbjct: 120  HNFLHGHALMMQKGQKLSRDKLRSQLEQAGYRSVDQVMAHGEFATRGALLDLYPMGSERP 179

Query: 184  VRLDFFGDTLESIRTFDPASQRTIAQARSLDLNPMSEVTLTPDTIGRFRKNYLSLFGAAT 243
             R+DFF D ++S+R FD  SQRT  +  +++L P  E     + I  FR  +   F    
Sbjct: 180  YRIDFFDDEIDSLRLFDVDSQRTQEEVAAINLLPAHEFPTDKNAIELFRSQWREHFDVRR 239

Query: 244  RDDALYQAVSEGRRYAGMEHWLPLFYEQ-LETAFDYLKGFRIVTDHTAKEAAKERS-KLV 301
              + +YQ VS+G   AG+E+W PLF+EQ L+  F YL    ++      E++  R    V
Sbjct: 240  EAEHIYQQVSKGTLPAGIEYWQPLFFEQPLQPLFRYLPANTLLVISGDLESSAGRFWHDV 299

Query: 302  LDYYEARRASGETKGSTQGAPYKPV-SPGQIYLDGKSFEAALASVNAVRLTPFNEHDSEG 360
               YE RR            P +P+  P  ++L      + L     ++L         G
Sbjct: 300  NARYENRRVD----------PMRPLLPPTSLWLRSDELFSELKQWPRIQLKTDLLAAKSG 349

Query: 361  RPVATLDAHVGPRWARPPTEGDSEERVNVFDLAVKHIAERRAKGWKVLITGWSEGSLDRL 420
                 LD H  P  A    +  ++  ++    A++   E  +    V+ +  SEG  + L
Sbjct: 350  N--TNLDYHALPDLA---VQAQAKTPLD----ALRRFLE--SFNGPVVFSVESEGRREAL 398

Query: 421  LQVLNEHGLEKIKP--VTSLKEVKKLGKGEAACAVLSLEAGFETG--TLAVIGEQDILGD 476
             ++L      K+KP  + SL + ++ G       + + E GF  G    A+I E D+LG+
Sbjct: 399  QELLARI---KLKPAAIHSLLQAREPGH---YLLIGASEHGFIDGLRNRALICESDLLGE 452

Query: 477  RMVRRSKRRKRGAD---FIAEVAGLDEGSLVVHAEHGIGRFVGLQTIEAAGAPRACLELH 533
            R+ RR +  +R  +    I  +A L  G  VVH EHG+GR++G+ T+E  G     L L 
Sbjct: 453  RVSRRRQDSRRTINPDVLIRNLAELHPGQPVVHLEHGVGRYIGMTTLETGGIKAEYLMLA 512

Query: 534  YADDAKLFLPVENIDLLSRYGSDAAE-ATLDKLGGGAWQMRKAKLKKRLLDMADELIRIA 592
            YA DAKL++PV ++ L+SRY   A E A L KLG  AW   + K  +++ D+A EL+ I 
Sbjct: 513  YAGDAKLYVPVSSLHLISRYAGGAEENAPLHKLGSDAWSRARQKAAEKVRDVAAELLDIY 572

Query: 593  AARLVRHAPALIAPDGLYDEFAARFPYDETEDQLNAIEAVRDDLGAGRPMDRLICGDVGF 652
            A R  +   A       Y  F   FP++ T DQ  AI AV  D+     MDRL+CGDVGF
Sbjct: 573  AQRAAKTGFAFKHDKQQYQLFCESFPFETTVDQAQAINAVLSDMCQPLAMDRLVCGDVGF 632

Query: 653  GKTEVALRAAFLAAMNGVQVAVVVPTTLLARQHFRTFSERFRGLPIRVQQASRLVGSKEL 712
            GKTEVA+RAAFLA  N  QVAV+VPTTLLA+QH+  F +RF   P+R++  SR   +KE 
Sbjct: 633  GKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMMSRFRTAKEQ 692

Query: 713  ALTKKEVAEGKTDIVVGTHALLGAGISFANLGLLIIDEEQHFGVKHKERLKELKSDVHVL 772
            A    +  EGK DI++GTH LL   I   +LGLLI+DEE  FGV+HKER+K +++DV +L
Sbjct: 693  AQVLADAQEGKVDILIGTHKLLQNDIKLRDLGLLIVDEEHRFGVRHKERIKAMRADVDIL 752

Query: 773  TLSATPIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQS 832
            TL+ATPIPRTL +AM+G+R+LS+I TPP  R+AV+TF+  +D L +RE ++RE  RGGQ 
Sbjct: 753  TLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDDLAVREAILREVLRGGQV 812

Query: 833  FYVCPRLADLADIHAFLQSDVPELKVAVAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVE 892
            +Y+   + ++      L   VPE +VA+ HGQM   ELE +MN F+  +++VL+ TTI+E
Sbjct: 813  YYLYNDVENIEKATQRLSELVPEARVALGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872

Query: 893  SGLDVPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTTMAERRLKV 952
            +G+D+PTANT+I+ RAD FGLAQL+QLRGRVGRS  +A+A    P  K +TT A +RL+ 
Sbjct: 873  TGIDIPTANTIIIERADRFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAHKRLEA 932

Query: 953  LQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGDEE- 1011
            + SL+ LGAGF LA+HDL+IRGAG LLGE QSG ++ +GF LY ++LE AV  +K   E 
Sbjct: 933  IASLEDLGAGFALATHDLEIRGAGELLGEGQSGQMETIGFSLYMELLENAVDALKEGREP 992

Query: 1012 -VRD-SGWSPQISVGTSVMIPEDYVPDLHLRMGLYRRLGELADISEIDGFGAEMIDRFGP 1069
             + D +     I +    ++P+DYVPD++ R+  Y+R+       E+D    E+IDRFG 
Sbjct: 993  SLEDLTNSQTDIELRMPSLLPDDYVPDVNTRLSFYKRIASALQSRELDALKVELIDRFGL 1052

Query: 1070 LPKEVQHLLKIVYIKSLCRTANVEKVDAGPKGVVVQFRNKEFPNPAALVGYIGKQGSMAK 1129
            LP   ++LL I  ++   +   V +V+A  KG  V+F  K   +PA L+G + ++    +
Sbjct: 1053 LPDAARNLLDIAALRLAAKKLGVRRVEASEKGGFVEFAEKNNVDPAWLIGLLQREPQHWR 1112

Query: 1130 IRPDHSLFLNRDLPTPEKRLTGAAMVMTQLAELA 1163
            +     +   RDL   + R+   +  +  + E A
Sbjct: 1113 LDGPTRIRFMRDLTERKVRMKWVSEFIEMMVEHA 1146