Pairwise Alignments

Query, 1165 a.a., transcription-repair coupling factor from Agrobacterium fabrum C58

Subject, 1164 a.a., Transcription-repair-coupling factor from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  720 bits (1858), Expect = 0.0
 Identities = 440/1159 (37%), Positives = 654/1159 (56%), Gaps = 45/1159 (3%)

Query: 19   IGNVPSGMEALLLADMA-RAGTSVAYVMSDGQRVADL-EQILGFVAPDIPVLTLPAWDCL 76
            +G +     A L+A++A R    V  +  D Q    L ++I  F   D  V+ L  W+ L
Sbjct: 35   LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT--DQMVMNLADWETL 92

Query: 77   PYDRVSPSADTSARRLAALAGLINHAKKPHPAVVLVTVNAMLQKMAPRDVIESLGFSARP 136
            PYD  SP  D  + RL+ L  L    +     V++V VN ++Q++ P   +       + 
Sbjct: 93   PYDSFSPHQDIISSRLSTLYQLPTMQR----GVLIVPVNTLMQRVCPHSFLHGHALVMKK 148

Query: 137  GNQIRMEDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGTEEPVRLDFFGDTLESI 196
            G ++  + +  +L+  G+  V  V E GE+A RG +LD+F  G+E P RLDFF D ++S+
Sbjct: 149  GQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSL 208

Query: 197  RTFDPASQRTIAQARSLDLNPMSEVTLTPDTIGRFRKNYLSLFGAATRDDALYQAVSEGR 256
            R FD  SQRT+ +  +++L P  E       I  FR  +   F      + +YQ VS+G 
Sbjct: 209  RVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGT 268

Query: 257  RYAGMEHWLPLFY-EQLETAFDYLKGFRIVTDHTAKEAAKERSKLVLDYYEARRASGETK 315
              AG+E+W PLF+ E L   F Y     ++ +    E + ER      +     A  E +
Sbjct: 269  LPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAER------FQADTLARFENR 322

Query: 316  GSTQGAPYKPVSPGQIYLDGKSFEAALASVNAVRLTPFNEHDSEGRPVATLDAHVGPRWA 375
            G     P  P  P  ++L      + L +   V+L       +E  P    +A++G  + 
Sbjct: 323  GVDPMRPLLP--PQSLWLRVDELFSELKNWPRVQLK------TEHLPTKAANANLG--FQ 372

Query: 376  RPPTEGDSEERVNVFDLAVKHIAERRAKGWKVLITGWSEGSLDRLLQVLNEHGLEKIKP- 434
            + P      ++    D   K +         V+ +  SEG  + L ++L      KI P 
Sbjct: 373  KLPDLAVQAQQKAPLDALRKFL---ETFDGPVVFSVESEGRREALGELLARI---KIAPQ 426

Query: 435  -VTSLKEVKKLGKGEAACAVLSLEAGF--ETGTLAVIGEQDILGDRMVRRSKRRKRGAD- 490
             +  L E    G+      + + E GF      LA+I E D+LG+R+ RR +  +R  + 
Sbjct: 427  RIMRLDEASDRGR---YLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINP 483

Query: 491  --FIAEVAGLDEGSLVVHAEHGIGRFVGLQTIEAAGAPRACLELHYADDAKLFLPVENID 548
               I  +A L  G  VVH EHG+GR+ G+ T+EA G     L L YA+DAKL++PV ++ 
Sbjct: 484  DTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLH 543

Query: 549  LLSRYGSDAAE-ATLDKLGGGAWQMRKAKLKKRLLDMADELIRIAAARLVRHAPALIAPD 607
            L+SRY   A E A L KLGG AW   + K  +++ D+A EL+ I A R  +   A     
Sbjct: 544  LISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDR 603

Query: 608  GLYDEFAARFPYDETEDQLNAIEAVRDDLGAGRPMDRLICGDVGFGKTEVALRAAFLAAM 667
              Y  F   FP++ T DQ  AI AV  D+     MDRL+CGDVGFGKTEVA+RAAFLA  
Sbjct: 604  EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD 663

Query: 668  NGVQVAVVVPTTLLARQHFRTFSERFRGLPIRVQQASRLVGSKELALTKKEVAEGKTDIV 727
            N  QVAV+VPTTLLA+QH+  F +RF   P+R++  SR   +KE      EVAEGK DI+
Sbjct: 664  NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDIL 723

Query: 728  VGTHALLGAGISFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIPRTLQLAM 787
            +GTH LL + + F +LGLLI+DEE  FGV+HKER+K ++++V +LTL+ATPIPRTL +AM
Sbjct: 724  IGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAM 783

Query: 788  TGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSFYVCPRLADLADIHA 847
            +G+R+LS+I TPP  R+AV+TF+  +D LV+RE ++RE  RGGQ +Y+   + ++     
Sbjct: 784  SGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAE 843

Query: 848  FLQSDVPELKVAVAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVESGLDVPTANTLIVHR 907
             L   VPE ++A+ HGQM   ELE +MN F+  +++VL+ TTI+E+G+D+PTANT+I+ R
Sbjct: 844  RLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 903

Query: 908  ADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTTMAERRLKVLQSLDTLGAGFQLAS 967
            AD FGLAQL+QLRGRVGRS  +A+A    P  K +TT A++RL+ + SL+ LGAGF LA+
Sbjct: 904  ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALAT 963

Query: 968  HDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGDEE--VRD-SGWSPQISVG 1024
            HDL+IRGAG LLGEEQSG ++ +GF LY ++LE AV  +K   E  + D +    ++ + 
Sbjct: 964  HDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELR 1023

Query: 1025 TSVMIPEDYVPDLHLRMGLYRRLGELADISEIDGFGAEMIDRFGPLPKEVQHLLKIVYIK 1084
               ++P+D++PD++ R+  Y+R+      +E++    E+IDRFG LP   + LL +  ++
Sbjct: 1024 MPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDVARLR 1083

Query: 1085 SLCRTANVEKVDAGPKGVVVQFRNKEFPNPAALVGYIGKQGSMAKIRPDHSLFLNRDLPT 1144
               +   + K++   KG V++F  K   NPA L+G + KQ    ++     L   +DL  
Sbjct: 1084 QQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSE 1143

Query: 1145 PEKRLTGAAMVMTQLAELA 1163
             + R+      M +L E A
Sbjct: 1144 RKTRIEWVRQFMRELEENA 1162