Pairwise Alignments

Query, 615 a.a., ABC transporter, substrate binding protein (peptide) from Agrobacterium fabrum C58

Subject, 611 a.a., microcin C transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  412 bits (1059), Expect = e-119
 Identities = 230/601 (38%), Positives = 334/601 (55%), Gaps = 20/601 (3%)

Query: 13  LLGSSLLPAGT--ALAQPLHGISMHGTP-ELPADFRHFPYVNPDVKKGGRISYGVVGTFD 69
           L GS LL   +  ALA P H ++++  P + PADF+HF YVNPD  KGG       G FD
Sbjct: 10  LAGSLLLACLSLPALAAPQHALTLYDEPPKYPADFKHFDYVNPDAPKGGTFRQSSFGGFD 69

Query: 70  SLNPFVLKGMRTTARGVWDPEFGNLLYESLMLRSSDEPFSLYGLLAETVEWDDERSFIQF 129
           SLNPF+ KG+     G+        +Y++LM +S DEPF+ YGL+A  +E   + S+++F
Sbjct: 70  SLNPFINKGVAAENIGI--------IYDTLMRQSQDEPFTEYGLVAGKIEKAPDNSWVRF 121

Query: 130 NINPRAKWSDGKPVTPDDVIFTFSLLKEKGRPPFNSRLDGVAKMEKVGDRGVRFTFNDKA 189
            + P A++ DG P+  DDV+FTF+ L + G P +      VA++       V F F  K 
Sbjct: 122 YLRPEARFHDGHPMRADDVVFTFNALIKDGAPLYRQYYADVAEVVAEEPLKVLFKFKHKN 181

Query: 190 NRETPLILASSTPILPKHAIDPEKFEQAGLGPVVGSGPYRIKTLRPGERIIWERNPDYWG 249
           NRE PLIL    P+LPKH  +  +F +  L   +GSGPY++  ++ G  + +ER  DYW 
Sbjct: 182 NRELPLILGQ-LPVLPKHWYENREFNRGNLEIPLGSGPYKVAKVKAGRSVRYERVKDYWA 240

Query: 250 KDIPGKVGFDNYDEISVTYFLQVTTMFEAFKKGDIDIYPEGDAINGTSDTSHWGQAYNFP 309
           KD+P   GF N+D ++   +   T   EA K G  D   E  A N       W  AYN P
Sbjct: 241 KDLPINRGFYNFDAMTFDAYRDTTVALEALKAGAFDYGLEVSAKN-------WATAYNVP 293

Query: 310 AVHRGDIVKDVFQPRLPTGMFGLVFNTRRATFADEKVREGLSYALDFEWLNRNILGGSFK 369
           AV  G ++K+      PTGM G +FN RR  F D +VR+ LS  LD+EW N+ +  G++ 
Sbjct: 294 AVREGRLIKEELPNGNPTGMQGFIFNIRRPVFQDVRVRQALSLLLDYEWTNKQLFNGAYT 353

Query: 370 RTQSYWQNSPLGAYGNAADERELALLGDAAKTMPAELLAGTYAMPTTDGTGADRKVLKLA 429
           RT SY++NS + A G      EL +L      +P ++    +  P +DG+G  R+  + A
Sbjct: 354 RTGSYFENSEMAARG-LPSPNELKILEPLRGKVPEQVFTEVFHNPVSDGSGMIREQQRQA 412

Query: 430 VDKLKEAGYSIKNGKMSDANGRQLAFEIMTQNPAQERIALAYQRSLNLIGVAMGIRSVDD 489
              L+EAG+ I + KM DA G+  + E +      ERI L ++R+L  +G+ + IR VD 
Sbjct: 413 YKLLQEAGWKIVDDKMVDAQGKPASIEFLLAQTEFERILLPFKRNLADLGIELNIRRVDV 472

Query: 490 GQYQARSNSFDYDMIIRSLPSSLSPGMEQLNRWNSLSRDAQGSFNYAGVANPDIDRMIEA 549
            QY  R  S DYDMI+   P S SPG EQ   W+S + D  GS N+ G+ +P ID++++ 
Sbjct: 473 SQYITRLRSRDYDMIVGGYPQSNSPGNEQREFWSSAAADNPGSRNFIGLRDPAIDQLVDQ 532

Query: 550 LLQARSTEDFQAAVRAYDRLLVAGHYIIPLYYIGAQWVARWKYIDRPDMTPISGNQKQTW 609
           L+ A S +      RA DR+L+ G+Y+IP ++I    VA W +I  P+++P       TW
Sbjct: 533 LINADSRQSLIDHCRALDRVLLWGYYVIPNWHIKTWRVAYWNHIGHPNVSPKYDIGIDTW 592

Query: 610 W 610
           W
Sbjct: 593 W 593