Pairwise Alignments

Query, 615 a.a., ABC transporter, substrate binding protein (peptide) from Agrobacterium fabrum C58

Subject, 609 a.a., Peptide ABC transporter, periplamic peptide-binding protein from Pseudomonas putida KT2440

 Score =  412 bits (1059), Expect = e-119
 Identities = 228/613 (37%), Positives = 340/613 (55%), Gaps = 26/613 (4%)

Query: 9   PALFLLGSSLLPAGTALAQPLHGISMHGTPELPADFRHFPYVNPDVKKGGRISYGVVGTF 68
           P L  L  +L     A+    HG +  GT + PA F HF +VNP   KGG +     GTF
Sbjct: 4   PLLLSLSLALSFPAAAIVSESHGYAQFGTLKYPATFTHFDWVNPQAPKGGTLRAMAFGTF 63

Query: 69  DSLNPFVLKGMRTTARGVWDPEFGNLLYESLMLR------SSDEPFSLYGLLAETVEWDD 122
           D+LNP+  KG        +     + L E LM+       S DEP S YGL+A +VE+ +
Sbjct: 64  DTLNPYTFKGSSPITTPNFQQYGISELNEPLMVGTGQYDPSGDEPTSSYGLIARSVEYSE 123

Query: 123 ERSFIQFNINPRAKWSDGKPVTPDDVIFTFSLLKEKGRPPFNSRLDGVAKMEKVGDRGVR 182
           +RS++ FN+ P A+W DG+P+T  DV F++  L + G P + + L  V +++ +G   +R
Sbjct: 124 DRSWVVFNLRPEARWHDGQPITSADVAFSYRTLLKDGHPIYRTNLQEVQRVDILGPLRIR 183

Query: 183 FTFNDKANRETPLILA--SSTPILPKHAIDPEKFEQAGLGPVVGSGPYRIKTLRPGERII 240
           F F    N   PL++      P+LPKH      F+     P +GSGPYRI  ++PG R++
Sbjct: 184 FVFKRAGN---PLLILRLGEMPVLPKHYWQKRDFKATTFEPPLGSGPYRITQVQPGRRLV 240

Query: 241 WERNPDYWGKDIPGKVGFDNYDEISVTYFLQVTTMFEAFKKGDIDIYPEGDAINGTSDTS 300
           +ER  +YWGKD+    G  N++ +   ++   T  FEAFK G+ DIY E  A N      
Sbjct: 241 FERVKNYWGKDLAVNRGKYNFNRVEYEFYRDATVAFEAFKAGEFDIYIEHQAKN------ 294

Query: 301 HWGQAYNFPAVHRGDIVKDVFQPRLPTGMFGLVFNTRRATFADEKVREGLSYALDFEWLN 360
            W   YNFPAV RG+++K      +PT   GL  N+RRA F+D +VR+ L   LDFEW N
Sbjct: 295 -WANGYNFPAVRRGEVIKAQIPHSIPTQTQGLFMNSRRAAFSDPRVRQALGLMLDFEWTN 353

Query: 361 RNILGGSFKRTQSYWQNSPLGAYGNAADERELALLGDAAKTMPAELLAGTYAMPTTDGTG 420
           R +   +++R+ SY+ NS   A G     +E  LL      +PA+L +  Y +  TDG G
Sbjct: 354 RALFSSAYRRSTSYYPNSEFAASGLPTG-KEWLLLAPFRDQLPAKLFSEPYKVSHTDGRG 412

Query: 421 ADRKVLKLAVDKLKEAGYSIKNGKMSDANGRQLAFEIMTQNPAQERIALAYQRSLNLIGV 480
             R+ L+ A+  L EAG+ +   ++ D+ G+QL  E++  NP  ERI   Y  +L+ IG+
Sbjct: 413 ISRQTLRQALGLLAEAGWKLHGQRLVDSKGQQLRMELLLVNPNLERILQPYVENLSSIGI 472

Query: 481 AMGIRSVDDGQYQARSNSFDYDMIIRSLPSSLSPGMEQLNRWNSLSRDAQGSFNYAGVAN 540
              +R+VD  QY+ R + FD+DMI+ +L  +LSPG+EQ   ++S     +GS NYAGV +
Sbjct: 473 DARLRTVDRAQYKQRLDQFDFDMILMTLNQTLSPGLEQWLYFHSSQAATKGSKNYAGVKD 532

Query: 541 PDIDRMIEALLQARSTEDFQAAVRAYDRLLVAGHYIIPLYYIGAQWVA---RWKYIDRPD 597
           P +D +++ LL AR+ +D  AA RA DR+L   +Y+IP +Y+    +A   R+ ++  P 
Sbjct: 533 PVVDHLLDTLLAARTRDDQVAAARALDRVLSWHYYMIPNWYLDNHRLAYRNRFAFVTTPP 592

Query: 598 MTPISGNQKQTWW 610
            T        +WW
Sbjct: 593 YT----LGLNSWW 601