Pairwise Alignments

Query, 346 a.a., transcriptional regulator, AraC family from Agrobacterium fabrum C58

Subject, 312 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  132 bits (332), Expect = 1e-35
 Identities = 91/314 (28%), Positives = 151/314 (48%), Gaps = 17/314 (5%)

Query: 10  SIVFFLIPQFTMLPFAAAVETLRIANRMLGYAAYEWRLSSLDGQKVMSSSGICLEVDTCL 69
           S+   + P F  L  +        AN + G  AYE+ L S  G  VM+S G  +      
Sbjct: 3   SVALMVYPNFQSLSLSLG-SVFECANLLRGEPAYEFHLVSESGGAVMTSQGFSVNTTPI- 60

Query: 70  ADERRYVSGENRPEM--AIICSGIDVDQHVNKSVNAWLREAYNRGIAIGSLCTAAHILAQ 127
                      RPE    +I SG    +    ++   ++ A  +   + SLC    +LA+
Sbjct: 61  -----------RPEGYDTLIVSGYLEFRLPEANLLELVKAASAQSRRVASLCMGIFVLAE 109

Query: 128 AGLLNGKRCAIHWENLPGFSEAFPQVEVYAD-LFEVDSNIYTCAGGTASLDMMLSLIGQD 186
           AGLL GKR   HW + P F + +P + +  D LF VD +++T AG +A +D+ L+++  D
Sbjct: 110 AGLLEGKRTTTHWIHAPAFRKRYPDIRLEEDKLFIVDGHVWTGAGMSAGVDLALAMVEND 169

Query: 187 FGENLVNRVCEQQLTDRVRSPNDRQRLPLRARLGVQNSKVLSIIELMEGNLSEPLSLLDI 246
            G +L  R+  ++L    R  +++ +L     L  ++ +V   +     NL+  LS+  +
Sbjct: 170 LGSDLARRIA-RKLVIAQRRGSEQSQLSALLELDPKSDRVQLALAYARENLTHDLSVEAL 228

Query: 247 ADAADLSRRQVERLFRQEMGRSPARYYLEIRLDRARHLLVQSAMPVVEVAVACGFVSASH 306
           AD A LS RQ  R+FR+E G++PA+    +R++ AR ++  S  PV  VA   GF     
Sbjct: 229 ADVARLSPRQFSRVFREETGQTPAKAIESLRVEAARAMMETSRHPVEVVARETGFGDRER 288

Query: 307 FSKCYREIYNRTPQ 320
             + +   + + PQ
Sbjct: 289 MRQAFLRAFGQPPQ 302