Pairwise Alignments

Query, 577 a.a., ABC transporter, nucleotide binding/ATPase protein from Agrobacterium fabrum C58

Subject, 602 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas putida KT2440

 Score =  323 bits (829), Expect = 9e-93
 Identities = 209/579 (36%), Positives = 313/579 (54%), Gaps = 25/579 (4%)

Query: 4   RFFAYYRPYRGLFILDFSCAVLSGVLELGFPMAVKAFVD-------VLLPGGQW--GIIL 54
           R  +Y +PY G+F+L     V+    +      +K FVD       VL P   +   + L
Sbjct: 19  RLLSYVKPYVGIFLLSIVGFVIFASTQPMLAGILKYFVDGLSNPEAVLFPNVPYLRDLQL 78

Query: 55  AASVGLLVIYVLN-TGLMATV-TYWGHMLGINIETDMRRLAFDHLQKLSFRYFDNQKTGH 112
             +V LL+I +    GL + +  Y+   + +++  D+R   F+ L  L  RYFDN  +GH
Sbjct: 79  LQAVPLLIILIAAWQGLGSFLGNYFLAKVSLSLVHDLRVALFNKLLVLPNRYFDNHNSGH 138

Query: 113 LVGRLTKDLEEIGEVAHHGPEDLFIAIMTFIGAFLLMMSVNVQLALVTAAVVPVTAWVTS 172
           L+ R+T ++  +   A    + +    +T +  F  ++ +N  L LV  A++PV A + S
Sbjct: 139 LISRITFNVTMVTGAATDAIKVVIREGLTVVFLFAYLLWMNWHLTLVMVAILPVIAVMVS 198

Query: 173 RYGGRMTQNFRALYGRVGDFNARIEENVGGMRVVQAFANEDHERSLFEKDNQKYRRTKLD 232
               +  +  + +   +GD      E + G RVV++F  E +E+  F + +Q     +L 
Sbjct: 199 IASKKFRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGEAYEQQRFGQASQSNTDKQLR 258

Query: 233 AYKIMAASTSLS----YMSMRLTQMIVMICGAWFVLNGSLTEGGFVGFLLLVGVFFRPVE 288
             K  +  T +     Y +M     +V+       L G  T G  V ++   G+  +P+ 
Sbjct: 259 MTKTGSLYTPMLQLVIYSAMAALMFLVLF------LRGDSTAGDLVAYITAAGLLPKPIR 312

Query: 289 KINSVIETYPKGIAGFRRFTELLDTAPDIVDAPDAIDAPALSGAIEYRHVGFGYAEGKR- 347
           +++ V  T  KG+AG     E LD AP++      ++   + G +E R++ F Y   +R 
Sbjct: 313 QLSEVSSTIQKGLAGAESIFEQLDEAPEVDTG--TVEKERVEGRLEVRNLSFTYPGTERE 370

Query: 348 VLDNIDLKISAGETVAFVGPSGAGKTTLCSLLPRFYDVTSGSITIDGIDIRKMKLASLRN 407
           VL +I      G+ +A VG SG+GK+TL +L+PRFY    G I +DG++I   +L +LR 
Sbjct: 371 VLSDISFVAEPGQMIALVGRSGSGKSTLAALIPRFYHHDKGQILLDGVEIEHYRLRNLRR 430

Query: 408 QIGIVQQDVFLFGGTIRENIEYGRL-GASDEEIMDAARRARLDGVIEAMPLGLDTVIGER 466
            +  V Q V LF  T+  NI YG L GA   +I  AA  A     ++ +P G DT +GE 
Sbjct: 431 HVSQVTQHVTLFNDTVANNIAYGDLAGAPRADIEAAAADAYAKEFVDRLPKGFDTEVGEN 490

Query: 467 GVKLSGGQKQRLAIARMFLKNPPILILDEATSALDTETERAIQQSLTELAKGRTTLVIAH 526
           GV LSGGQ+QRLAIAR  LKN P+LILDEATSALDTE+ER IQ +L  + +GRTTLVIAH
Sbjct: 491 GVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDHVMQGRTTLVIAH 550

Query: 527 RLATIRDASRIVVVDQTGIAETGAHAELLAAKGHYSRLH 565
           RL+TI  A +I+V+DQ  + E G H ELLAA GHY+RLH
Sbjct: 551 RLSTIEKADQILVMDQGRLVERGTHTELLAANGHYARLH 589