Pairwise Alignments

Query, 265 a.a., exonuclease III from Agrobacterium fabrum C58

Subject, 270 a.a., exodeoxyribonuclease III / apurinic/apyrimidinic endodeoxyribonuclease VI from Pseudomonas putida KT2440

 Score =  168 bits (426), Expect = 1e-46
 Identities = 94/266 (35%), Positives = 147/266 (55%), Gaps = 12/266 (4%)

Query: 1   MKIATWNINGVKARIENLCQWLKDSSPDIVCLQEIKSVDEGFPRLEIEALGYHIETHGQK 60
           MKI  +NING++AR   L   ++   PD++ LQE K  D+ FP  +++ALGYH+  HGQK
Sbjct: 1   MKIVCFNINGLRARPHQLAALIEKHQPDVIGLQETKVSDDQFPLADVQALGYHVHYHGQK 60

Query: 61  GFNGVALLSKVKPDEVNRGLPGDDADEQARFIEGVFS-VEGGAIRVCSLYLPNGNPPDDP 119
           G  GVALLS+  P  +++G   D+ D Q RFI G F+   G  I + + Y P G   D P
Sbjct: 61  GHYGVALLSRQPPLSLHKGFATDEEDAQRRFIWGTFADANGSPITIMNGYFPQGESRDHP 120

Query: 120 VKYPYKLAWMERLRRFAEDRLAMEEPLILAGDYNVIPEPFDC----HDPRVW--EGDALF 173
            K+P K  +   L+   E +   ++P+++ GD N+ P+  D      + + W   G   F
Sbjct: 121 TKFPAKQRFYSDLQALLESQFRNDQPVLVMGDMNISPQDCDIGIGPDNAKRWLKTGKCSF 180

Query: 174 LPKTRAAFRKLENLGFTDAAR-ATTDAAGLYSFWDYQAGAW---PKNNGIRIDHLMLSAE 229
           LP+ R    +L+  G  D+ R    D    +S++DY++  +   PK  G+RID +M S +
Sbjct: 181 LPEEREWMERLKGWGLVDSFRHLYPDVTDRFSWFDYRSRGFEDEPK-RGLRIDLIMASQQ 239

Query: 230 AADRLQSVEIEKHVRAWEKPSDHVPV 255
              R+++  ++  +R  EKPSDH P+
Sbjct: 240 LVPRIKAAGVDYELRGMEKPSDHAPI 265