Pairwise Alignments

Query, 537 a.a., lipoprotein from Agrobacterium fabrum C58

Subject, 303 a.a., Murein hydrolase activator NlpD from Variovorax sp. SCN45

 Score =  122 bits (305), Expect = 2e-32
 Identities = 95/289 (32%), Positives = 141/289 (48%), Gaps = 29/289 (10%)

Query: 254 DQPTPLRAPDGNVAVLPSQAAARDKLSSEAGKLTPPGGKPLPPSGGYKVQPGDSLAKIAR 313
           D+ T  RAP       PS       ++++A      G +     G Y V+PGD++ +I  
Sbjct: 35  DRGTMTRAP------APSTVPGGPPITTDANGKPLAGIENYGKPGYYAVRPGDTIRRIGI 88

Query: 314 ANGVSVAALKAANGISN-ESIRVGQTLAM--PGASTDAIKTASVPAK--EAAAAKPVETA 368
             G     +   N I N + I VGQ L +  P  S  ++  A  P+   E A  KPV   
Sbjct: 89  ETGQRWQDIVRWNNIDNPDLIEVGQVLRVIPPTGSGTSVAVAPPPSSGSEGAVTKPVT-- 146

Query: 369 SIKPEPYKAPAAAATTAA-PATPATASVSDIEKKADMASIAPESTGIGKYRWPVRGAVIN 427
              P P  AP   +T A  P  P TAS       A   S A     +G + WP  G++I 
Sbjct: 147 ---PPPVIAPVTPSTGATKPPAPVTAS------PASPGSGASGDEDLG-WIWPASGSLIA 196

Query: 428 NFGDNVEGSRNDGINISVPEGTPIKAAENGVVIYAGNGLKQLGNTVLVRHDDGKVTVYGN 487
            F +    ++N G +IS   G P+ AA +G V+YAG GL+  GN ++++H++  +T Y +
Sbjct: 197 GFDE----AKNKGYDISGKAGDPVLAAADGRVVYAGAGLRGYGNLIILKHNNTYLTAYAH 252

Query: 488 AANLDVQRGQKVQRGQTIATSGMTGSAKRPQVHFEVRKDATPVNPSGFL 536
              L V+  Q VQ+GQ IA  G +  A R ++HFE+R+   PV+PS +L
Sbjct: 253 NQTLLVKEDQSVQKGQKIAEMG-SSDADRVKLHFEIRRQGKPVDPSRYL 300



 Score = 31.2 bits (69), Expect = 6e-05
 Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 9/139 (6%)

Query: 160 QAAAPTDNLTTATVRSDKNGWHTDGASSV------TLRPGESIATISNRYGVPEKELLRV 213
           +A AP+       + +D NG    G  +        +RPG++I  I    G   ++++R 
Sbjct: 41  RAPAPSTVPGGPPITTDANGKPLAGIENYGKPGYYAVRPGDTIRRIGIETGQRWQDIVRW 100

Query: 214 NGLKTASSAQAGQSI-LIPKFGQARNAAKDAAGNIALNRNGDQPTPLRAPDGNVAVLPSQ 272
           N +      + GQ + +IP  G   + A   A   +    G    P+  P     V PS 
Sbjct: 101 NNIDNPDLIEVGQVLRVIPPTGSGTSVA--VAPPPSSGSEGAVTKPVTPPPVIAPVTPST 158

Query: 273 AAARDKLSSEAGKLTPPGG 291
            A +      A   +P  G
Sbjct: 159 GATKPPAPVTASPASPGSG 177