Pairwise Alignments

Query, 276 a.a., tolB protein from Agrobacterium fabrum C58

Subject, 444 a.a., Tol-Pal system beta propeller repeat protein TolB from Sphingobium sp. HT1-2

 Score = 84.7 bits (208), Expect = 3e-21
 Identities = 59/183 (32%), Positives = 82/183 (44%), Gaps = 14/183 (7%)

Query: 93  IYLLPSTGGTPRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH 151
           IY+     G  RL+T+ N  ++   WSPDG++  +        DIY +    G   RLT+
Sbjct: 238 IYVYDIGTGQQRLVTESNNTTFAPRWSPDGRNILFSMAVSGNTDIYRVSAQGGAPVRLTN 297

Query: 152 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDK 211
             G + G  YSPDGR I F S R+G  QI+ +  DGS+  RI+        P  SP GD 
Sbjct: 298 SPGIDVGGSYSPDGRQIVFESDRSGGQQIYVMNADGSNQRRISHGGGRYATPEWSPRGDL 357

Query: 212 VVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVR 271
           + F              D ++ +M   G N   L +  G Q     P WSP+G    + R
Sbjct: 358 IAFTKLSG---------DFKIAVMTPSGDNERILTN--GWQD--EQPTWSPNGRVLQFFR 404

Query: 272 YFP 274
             P
Sbjct: 405 TTP 407



 Score = 72.8 bits (177), Expect = 1e-17
 Identities = 49/155 (31%), Positives = 71/155 (45%), Gaps = 11/155 (7%)

Query: 117 WSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG 176
           +SPD KS  Y         IY  DI +G +  +T        P +SPDGR I F+ + +G
Sbjct: 219 FSPDYKSIVYVSYLGSRVRIYVYDIGTGQQRLVTESNNTTFAPRWSPDGRNILFSMAVSG 278

Query: 177 QMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMD 236
              I+RV   G +  R+T+S   D     SP G ++VF S         R    ++ +M+
Sbjct: 279 NTDIYRVSAQGGAPVRLTNSPGIDVGGSYSPDGRQIVFES--------DRSGGQQIYVMN 330

Query: 237 MDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVR 271
            DG N   +     G G   +P WSP GD  A+ +
Sbjct: 331 ADGSNQRRISH---GGGRYATPEWSPRGDLIAFTK 362



 Score = 62.4 bits (150), Expect = 2e-14
 Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 28/220 (12%)

Query: 2   RSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDT 61
           R  I +++I T + R+V ++     AP WSPDG+        +L+ ++++G+    +V  
Sbjct: 235 RVRIYVYDIGTGQQRLVTESNNTTFAPRWSPDGR-------NILFSMAVSGNTDIYRVSA 287

Query: 62  --GFATICNNDHGI------SPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSY 113
             G      N  GI      SPDG    + +    G   IY++ + G   R ++     Y
Sbjct: 288 QGGAPVRLTNSPGIDVGGSYSPDGR-QIVFESDRSGGQQIYVMNADGSNQRRISHGGGRY 346

Query: 114 -WHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYF-- 170
               WSP G    +  +    F I  M      E  LT+G  +++ P +SP+GR + F  
Sbjct: 347 ATPEWSPRGDLIAFTKLSGD-FKIAVMTPSGDNERILTNG-WQDEQPTWSPNGRVLQFFR 404

Query: 171 -NSSRTGQMQIWRVRVDGSSVERI------TDSAYGDWFP 203
               R G  Q+W+V + G +  RI      +D A+G   P
Sbjct: 405 TTPGRQGSSQVWQVDLTGVNERRIPTPLSGSDPAWGPLLP 444



 Score = 30.0 bits (66), Expect = 9e-05
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 208 SGDKVVFVSYDADVFDH-PRDLDV-RVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGD 265
           SG+   F S  A + +  P+D  V R+ +MD DG N   + +   GQ    +P +SPD  
Sbjct: 168 SGESPFFDSRIAYIAESGPKDNRVKRLAIMDSDGANHRFITN---GQSIALTPRFSPDYK 224

Query: 266 EFAYVRY 272
              YV Y
Sbjct: 225 SIVYVSY 231