Pairwise Alignments

Query, 312 a.a., ABC transporter, substrate binding protein (amino acid) from Agrobacterium fabrum C58

Subject, 337 a.a., Putative amino-acid ABC transporter-binding protein YhdW from Xanthobacter sp. DMC5

 Score =  355 bits (912), Expect = e-103
 Identities = 169/312 (54%), Positives = 213/312 (68%), Gaps = 2/312 (0%)

Query: 1   MKGKGFVTCGVSAGIPGFSNPDDKGEWSGIDVDYCRGIATAVFGDPSKAKFVALSSKDRF 60
           +K +G + CGVS G+PGFS  D  G+W+G DVD C+ +A A+F D +K K+V L++ +RF
Sbjct: 28  VKDRGELVCGVSKGLPGFSAQDASGKWTGFDVDVCKALAAAIFDDANKVKYVPLTADERF 87

Query: 61  PALQSGEVDVLTRNTTWTISRDTSLGFNFRTVNYYDGQGFIAKKGLNVKSALELSGAAVC 120
           PAL  G++DVL+RN+TWT+ R+  LG  F  +NYYDGQGF+ +    V SALEL  + VC
Sbjct: 88  PALTKGDIDVLSRNSTWTLEREAKLGLLFTAINYYDGQGFLVRDARKVTSALELDKSKVC 147

Query: 121 VQTGTTTELNLADYFKTNNLQYNPVVFEKESDATSAYDSGRCDVYTTDQSGLYAIRLKLK 180
           VQ GTT E N  DYF  N +    V      +   AYD G+CD  TTD S LYA+RL + 
Sbjct: 148 VQAGTTAESNTKDYFAANGMTLELVTLPTSGELVKAYDEGKCDTLTTDVSQLYALRLTMA 207

Query: 181 NPDDNIVLPEVISKEPLGPAVRQGDDQWFDIVTWVHYAMVNAEELGITSKNVDEQKTSAN 240
            P D+IVLP+VISKEPLGP VRQGDDQWF++V W  YAM+NAEELG+ +  +D    S  
Sbjct: 208 KPGDHIVLPDVISKEPLGPVVRQGDDQWFNLVKWTVYAMINAEELGVATNTLDAAIKSQK 267

Query: 241 PDVKRLLGTEEGTKIGTDLGVGNDWAYNIVKLVGNYGEVFDRNVGAGSPLKIERGQNALW 300
           P+VKRL+G E     G +LGV  D+   IVK VGNYGE F+RNVGA S L I RG N LW
Sbjct: 268 PEVKRLVGNE--GNYGEELGVTKDFVVRIVKAVGNYGESFERNVGAASKLGIPRGINQLW 325

Query: 301 TKGGLQYAPPVR 312
           + GG+QYAPPVR
Sbjct: 326 SMGGIQYAPPVR 337