Pairwise Alignments

Query, 312 a.a., ABC transporter, substrate binding protein (amino acid) from Agrobacterium fabrum C58

Subject, 339 a.a., Putative amino-acid ABC transporter-binding protein YhdW from Azospirillum sp. SherDot2

 Score =  425 bits (1093), Expect = e-124
 Identities = 202/313 (64%), Positives = 241/313 (76%), Gaps = 3/313 (0%)

Query: 1   MKGKGFVTCGVSAGIPGFSNPDDKGEWSGIDVDYCRGIATAVFGDPSKAKFVALSSKDRF 60
           +K +GFV CGV+AG+PGF NPD  G W+G+DVDYCR +A A+FGD +K KF  LS++ RF
Sbjct: 29  VKQRGFVQCGVNAGLPGFGNPDSAGNWTGLDVDYCRAVAVAIFGDANKVKFTPLSAQQRF 88

Query: 61  PALQSGEVDVLTRNTTWTISRDTSLGFNFRTVNYYDGQGFIAKKGLNVKSALELSGAAVC 120
           PA+QSGEVD+L+RNTT T++RDTS+G NF  V YYDGQGF+  K L VKSA EL+GA VC
Sbjct: 89  PAIQSGEVDLLSRNTTATLTRDTSVGLNFAPVTYYDGQGFMVPKKLGVKSAKELNGATVC 148

Query: 121 VQTGTTTELNLADYFKTNNLQYNPVVFEKESDATSAYDSGRCDVYTTDQSGLYAIRLKLK 180
           VQ+GTTTELNLADYF+ NN+ YNPVV E   +  +AY +GRCDV TTD SGL   R  + 
Sbjct: 149 VQSGTTTELNLADYFRANNMTYNPVVIESNDEVNAAYFAGRCDVLTTDVSGLAGTRAGVA 208

Query: 181 N-PDDNIVLPEVISKEPLGPAVRQGDDQWFDIVTWVHYAMVNAEELGITSKNVDEQKTSA 239
             PDD+++LPEVISKEPL PAVR GDDQWFDIV W  +A + AEE GITSKNVDE   S 
Sbjct: 209 PVPDDHVILPEVISKEPLAPAVRHGDDQWFDIVKWTVFATIQAEEFGITSKNVDEFTNSK 268

Query: 240 NPDVKRLLGTEEGTKIGTDLGVGNDWAYNIVKLVGNYGEVFDRNVGAGSPLKIERGQNAL 299
           NPD++R LGT  G  +G  LG+   WAYN+VK VGNY E+FDRNVG G+PLK+ERG NAL
Sbjct: 269 NPDIQRFLGTSPG--MGKALGLDEKWAYNVVKKVGNYAEIFDRNVGPGTPLKLERGLNAL 326

Query: 300 WTKGGLQYAPPVR 312
           WTKGGL YA P R
Sbjct: 327 WTKGGLMYAQPFR 339