Pairwise Alignments

Query, 390 a.a., penicillin binding protein from Agrobacterium fabrum C58

Subject, 388 a.a., serine-type D-Ala-D-Ala carboxypeptidase DacD from Escherichia coli ECRC98

 Score =  164 bits (415), Expect = 4e-45
 Identities = 106/373 (28%), Positives = 181/373 (48%), Gaps = 8/373 (2%)

Query: 10  RSAIVVAAFAFFSAGAAQSQTAPFIAKAEQAY-----MIDAETGTVLLSQNEDQSFPPAS 64
           R  I  + F F  +    ++  PF  +  + +     ++D  TG +L + NE Q   PAS
Sbjct: 4   RLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRNPAS 63

Query: 65  LAKLMTVEVVLDALSKGQVTPETAYPVSEYAW-RTGGAPSRTSTMFAALKSSVGINDLLT 123
           L KLMT  VV  A+   ++TP+    V   AW +       +S MF      V + DL  
Sbjct: 64  LTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSR 123

Query: 124 GIIVQNANDGCIIVAEGMAGSDAAFAKRMTARAGELGMNRSIFSNSTGLPDPGNQTTARD 183
           G+IV + ND C+ +A+ +AG    F + M   A +L +  + F    GL  PG  ++A D
Sbjct: 124 GLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYD 183

Query: 184 MVRLAQHLHDTYPDRYALFTKPDFEWNRIFQRNKNTLLMPGS-GIDGLGLGFAEGSGFAA 242
           +  L++ +    P+ Y ++++    WN I Q+N+N LL   +  +DGL  G   G+GF  
Sbjct: 184 LAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNL 243

Query: 243 VVSAEREGRRVYLALAGIADDKTRQEEARRVVDWGLTAFEKRHLFSKDEAVGAVSVYGGD 302
           + SA    RR+   + G    K R+EEAR+++ WG   F    +  + + VG   ++ GD
Sbjct: 244 IASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGD 303

Query: 303 VSHIDLSPKEDVSVLVPVNNPDRISGRIVYRW-PLNAPLDVGANAGTLKIFSGERLLREV 361
             +I L  +++  +++P      I  +       L AP+      G ++++  ++ +   
Sbjct: 304 KENIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEIELYDRDKQVAHW 363

Query: 362 PLYTKTAVGKGSL 374
           PL T  +VG+GS+
Sbjct: 364 PLVTLESVGEGSM 376