Pairwise Alignments

Query, 329 a.a., ribosomal large subunit pseudouridine synthase C from Agrobacterium fabrum C58

Subject, 320 a.a., ribosomal large subunit pseudouridine synthase D from Pseudomonas simiae WCS417

 Score =  114 bits (285), Expect = 3e-30
 Identities = 104/337 (30%), Positives = 162/337 (48%), Gaps = 55/337 (16%)

Query: 8   KVEADEAGMRLDRWFKIHYPGLGFGQLQKLLRSGQVRVDGGRVKTDARVQPGQMVRVPPV 67
           +V ++  G RLD+     +      +L   ++ G++ VDG      A ++P  +V     
Sbjct: 10  EVPSELGGQRLDQVAAQLFAEHSRSRLSAWIKDGRLTVDG------AVIRPRDIVH---- 59

Query: 68  DSDMKTKTGPIGSKDLKHSADGELLARML----LHEDDKVLVFNKPAGIAVQGGSGVNRH 123
                   G I     +  A GE +A+ +    ++EDD +LV NKPAG+ V   +G   H
Sbjct: 60  -------GGAILELTAEQEAQGEWVAQDIELDIVYEDDDILVINKPAGLVVHPAAG---H 109

Query: 124 IDG-LLEAWTSPKGE---KPR--LVHRLDRDTSGVLVVARTRGAAQKLTAAFRERDTKKT 177
            DG LL A      +    PR  +VHRLD+DT+G++VVA+T  A  +L    + R   + 
Sbjct: 110 ADGTLLNALLHHVPDIINVPRCGIVHRLDKDTTGLMVVAKTIQAQTQLVTQLQSRSVSRI 169

Query: 178 YWALVRGVPRKHQDKISTWLVKEQTPDGDRMRIAKHGEEGADHAISYYRVIDTAAQNLAW 237
           Y  +V GV      KI+  + +       R R+A    EG   A+S+YRV++    +   
Sbjct: 170 YECIVIGVV-VAGGKINAPIGRH---GQQRQRMAV--MEGGKQAVSHYRVLERFRSH-TH 222

Query: 238 LEMEPYTGRTHQLRVHALHMGHPIIGDPKY------------YIDDPNWDFPGGVQKRLH 285
           + ++  TGRTHQ+RVH  H+  P++GDP Y             + D   +FP     R  
Sbjct: 223 VRVKLETGRTHQIRVHMAHINFPLVGDPAYGGRFRIPPAASATMVDSLKNFP-----RQA 277

Query: 286 LHARHIDIPHPNGG-RLRVSAPLPPHMVQTWNLLGLD 321
           LHAR +++ HP  G R+   +PLP  +V   +LL  D
Sbjct: 278 LHARFLELDHPTSGKRMSWESPLPDDLVWLLSLLKQD 314