Pairwise Alignments

Query, 836 a.a., ATP-dependent Clp protease, ATP-binding subunit from Agrobacterium fabrum C58

Subject, 854 a.a., Chaperone protein ClpB from Pseudomonas putida KT2440

 Score =  293 bits (750), Expect = 3e-83
 Identities = 181/469 (38%), Positives = 265/469 (56%), Gaps = 40/469 (8%)

Query: 8   LEKALHQALTFANERHHEYATLEHLLLALIDDADAAA--VMAACNVDLDALRKTVSDYVD 65
           L+ A+  A + A    H      HLL AL++    +   ++     D++ LR+ +   +D
Sbjct: 10  LQLAISDAQSLAVGMDHPAIEPVHLLQALLEQQGGSIKPLLMQVGFDINGLRQGLVKELD 69

Query: 66  NELTNLVTGYDEDSKPTSGFQRVIQRAVIHVQSSGREEVTGANVLVAIFAERESHAAYFL 125
                 +     D   +    R++ +A    Q  G + ++   VL+A   E        L
Sbjct: 70  Q--LPKIQNPTGDVNMSQDLARLLNQADRLAQQKGDQFISSELVLLAAMDENSKLGKLLL 127

Query: 126 QEQEMTRYDAVNYISHGIGKRPGTSQTRAPRGADEPESESKPSRGNPEEDGSSAKKQQDA 185
                         S G+ K+               E+     RG    + ++A++ + A
Sbjct: 128 --------------SQGVSKKA-------------LENAINNLRGGAAVNDANAEESRQA 160

Query: 186 LKAYCVNLNDKARNGKIDPLIGRHDEVNRTIQILCRRSKNNPLYVGDPGVGKTAIAEGLA 245
           L  Y V+L  +A  GK+DP+IGR DE+ RT+Q+L RR+KNNP+ +G+PGVGKTAIAEGLA
Sbjct: 161 LDKYTVDLTKRAEEGKLDPVIGRDDEIRRTVQVLQRRTKNNPVLIGEPGVGKTAIAEGLA 220

Query: 246 KRIVEGKVPEALANDTIFSLDMGTLLAGTRYRGDFEERLKQVVKELEEFPG-AVLFIDEI 304
           +RI+ G+VP+ L    + +LDMG L+AG +YRG+FEERLK ++ EL +  G  +LFIDE+
Sbjct: 221 QRIINGEVPDGLKGKRLLALDMGALIAGAKYRGEFEERLKSLLNELSKQEGQIILFIDEL 280

Query: 305 HTVIGAGATSGGAMDASNLLKPALSSGAIRCIGSTTYKEYRQFFEKDRALVRRFQKIDVN 364
           HT++GAG    GAMDA N+LKPAL+ G + C+G+TT  EYRQF EKD AL RRFQK+ V 
Sbjct: 281 HTMVGAG-KGEGAMDAGNMLKPALARGELHCVGATTLNEYRQFIEKDAALERRFQKVLVE 339

Query: 365 EPSIDDAIAIMKGLKPYFEDYHHLRYSNEAIKAAVELSARYISDRKLPDKAIDVIDETGA 424
           EPS +D IAI++GLK  +E +H +  ++ AI AA +LS RYI+DR+LPDKAID+IDE  +
Sbjct: 340 EPSEEDTIAILRGLKERYEVHHKVAITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAAS 399

Query: 425 AQMLLPASKRRKL--ITEREIEATIATMARIPPKTVSKDDEMVLANLEK 471
              +   SK   L  +  R I+  + + A        ++DE     LEK
Sbjct: 400 RIRMEIDSKPEVLDRLDRRLIQLKVESQA-----LKKEEDEAAKKRLEK 443



 Score =  270 bits (689), Expect = 3e-76
 Identities = 142/343 (41%), Positives = 219/343 (63%), Gaps = 9/343 (2%)

Query: 413 DKAIDVIDETGAAQMLLPASKRRKLITEREIEATIATMARIPPKTVSKDDEMVLANLEKE 472
           ++++ ++D+ G     L  +K    +TE EI   ++    IP   + + +   L  +E+ 
Sbjct: 510 ERSLQMVDQHGKTDNQLLRNK----VTEEEIAEVVSKWTGIPVAKMLEGEREKLLKMEEL 565

Query: 473 LRSVVYGQDIAIEALATAIKLARAGLREPNKPIGSYVFSGPTGVGKTEVAKQLAASL--- 529
           L   V GQ  A+ A+A A++ +RAGL +PN+P GS++F GPTGVGKTE+ K LA  L   
Sbjct: 566 LHQRVIGQSEAVTAVANAVRRSRAGLSDPNRPSGSFLFLGPTGVGKTELCKALAEFLFDT 625

Query: 530 GVEMLRFDMSEYMERHTVSRLLGAPPGYVGFDQGGLLTDGVDQHPHSVVLLDEIEKAHPD 589
              M+R DMSE+ME+H+V+RL+GAPPGYVG+++GG LT+ V + P+SVVLLDE+EKAHPD
Sbjct: 626 EEAMVRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVVLLDEVEKAHPD 685

Query: 590 IYNILLQVMDHGSLTDHNGKKIDFRNVILIMTTNAGASEMAKSAIGFGSSRRTGEDEEAI 649
           ++N+LLQV++ G LTD +G+ +DFRN +++MT+N G++++ +  +G   ++R     +A+
Sbjct: 686 VFNVLLQVLEDGRLTDSHGRTVDFRNTVIVMTSNLGSAQI-QELVGDREAQRAAV-MDAV 743

Query: 650 NRLFTPEFRNRLDAIIPFSPLPTAVIHKVVQKFVMQLETQLSERNVTFDLHEDAISWLAE 709
              F PEF NR+D ++ F PL    I  + +  + +L ++L ER ++  L  +A+  L  
Sbjct: 744 GAHFRPEFINRIDEVVVFEPLGREQIAGITEIQLGRLRSRLLERELSLSLSPEALDKLIA 803

Query: 710 KGYDEKMGARPLSRVIQEHIKKPLANEILFGKLKKGGVVSVTV 752
            GYD   GARPL R IQ  I+ PLA  IL GK   G  ++  V
Sbjct: 804 VGYDPVYGARPLKRAIQRWIENPLAQLILAGKFLPGTAITAKV 846