Pairwise Alignments

Query, 977 a.a., ribonuclease E from Agrobacterium fabrum C58

Subject, 485 a.a., endoribonuclease G (RNAse G) from Pseudomonas putida KT2440

 Score =  247 bits (630), Expect = 2e-69
 Identities = 140/400 (35%), Positives = 217/400 (54%), Gaps = 5/400 (1%)

Query: 269 IQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITQPTDR 328
           I  ++   Q L+VQV K+  G KGA LTT LS+  RY V MP ++  G IS KI    +R
Sbjct: 84  ITALVHEGQALVVQVTKDPIGTKGARLTTQLSIPSRYLVYMPRSSHVG-ISLKIEDEAER 142

Query: 329 KRLKEIARDL----EVPQGMGVILRTAGANRTRVEIKRDFEYLMRLWENVRTLTLNSTAP 384
           +RLK++  D      +    G ILRTA       EI +D  YL RLWE + T      AP
Sbjct: 143 ERLKQVVSDCMDGENIKDAGGFILRTAAEGARAEEILQDIRYLRRLWEQIGTQIKTCGAP 202

Query: 385 CLVYEEGSLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKMLMPSHAKVVQPYRDIHPI 444
            ++YE+  L  R++RDL N  I +I +   E +++   F+  LMP  A  ++ Y    PI
Sbjct: 203 TVIYEDLGLALRTLRDLVNPKIEKIRIDSRETFQKTTQFVGELMPEIADRLEHYPGERPI 262

Query: 445 FSRSGIEAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHSIEETALTTNLE 504
           F   G+E ++ R L+ +V LKSGGYL+++  EA+  IDVN+G      ++EET   TNLE
Sbjct: 263 FDLYGVEDEIQRALERKVPLKSGGYLVVDPAEAMTTIDVNTGAFVGHRNLEETIFKTNLE 322

Query: 505 AAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLL 564
           AA  +ARQLRLR++ G+++IDFIDME++ + R V + L+  L+ D A+  +  I+  GL+
Sbjct: 323 AATAIARQLRLRNIGGIIIIDFIDMEDEDHQRQVLRTLEKQLERDHAKTNIIGITELGLV 382

Query: 565 EMSRQRIRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGVEEYLLRNTTHNITVRCTP 624
           +M+R+R R S+ +   + C  C G G +++  +I   + R +             V    
Sbjct: 383 QMTRKRTRESLEQVLCEPCLACQGRGKLKTPETICYEIFREILREARAYQAEGYRVLANQ 442

Query: 625 ETALYLLNHKRGSIVDYEGRFGVAIIIAADSSVGAQHFAI 664
           +    LL+ + G++ + E   G  I    +S    + + +
Sbjct: 443 KVVDRLLDEESGNVAELEAFIGRTIRFQVESMYSQEQYDV 482



 Score = 53.9 bits (128), Expect = 2e-11
 Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1  MADKMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD 60
          M++++LI+ +   E+RV VV    ++E   E   ++ I GNIY  KV RV P +QAAFVD
Sbjct: 1  MSEEILINIT-PMESRVAVVENGVLQEVHVERTQRRGIVGNIYKGKVVRVLPGMQAAFVD 59

Query: 61 YGGNRHGFLAFAEI 74
           G  R  F+  +EI
Sbjct: 60 IGLERAAFIHASEI 73