Pairwise Alignments

Query, 977 a.a., ribonuclease E from Agrobacterium fabrum C58

Subject, 1067 a.a., Ribonuclease E (EC 3.1.26.12) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  357 bits (916), Expect = e-102
 Identities = 241/703 (34%), Positives = 363/703 (51%), Gaps = 84/703 (11%)

Query: 269 IQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITQPTDR 328
           I++V++  Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN  R GGISR+I +  DR
Sbjct: 90  IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDDR 148

Query: 329 KRLKEIARDLEVPQGMGVILRTAGANRTRVEIKRDFEYLMRLWENVRTLTLNSTAPCLVY 388
             LKE    LE+P+GMG+I+RTAG  ++   ++ D  + ++ WE ++    +  AP L++
Sbjct: 149 TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIQKAAESRPAPFLIH 208

Query: 389 EEGSLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKML-MPSHAKVVQPYRDIHPIFSR 447
           +E ++I R+ RD   +DI EI++   +    A+  +  L  P  +  ++ Y    P+FS 
Sbjct: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVMEMARQHIAALGRPDFSSKIKLYTGEIPLFSH 268

Query: 448 SGIEAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHSIEETALTTNLEAAE 507
             IE+Q++   Q +V L SGG ++I+ TEAL AID+NS R+TR   IEETA  TNLEAA+
Sbjct: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328

Query: 508 EVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEMS 567
           E+ARQLRLRDL GL+VIDFIDM   R+ R+VE +L++ ++ DRARIQ+  IS FGLLEMS
Sbjct: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388

Query: 568 RQRIRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGVEEYLLRNTTHNITVRCTPETA 627
           RQR+  S+ ES+  VC  C GTG VR   S++L +LR +EE  L+  T  +        A
Sbjct: 389 RQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIA 448

Query: 628 LYLLNHKRGSIVDYEGR-FGVAIIIAADSSVGAQHFAIDRGEAVENPVKIESLIQMLPSF 686
            YLLN KR ++   E R  GV  +I  +  +   H+++ R   V    +  +L  MLP  
Sbjct: 449 SYLLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLR---VRKGEETPTLSYMLPKL 505

Query: 687 VEEEDDIVIEVEEDE---------------------------------EEEEIVKAESAQ 713
            EE   +  E E  E                                 +++ +  A+ AQ
Sbjct: 506 HEEAMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSVATAKKDNVAAAQPAQ 565

Query: 714 P----------RQQPQGDN-----------GEDGKRKRKRRR-RRRGKGGQNEQNGALDG 751
           P          +Q   G+             E  +R++ RR+ R+  +  +NE+    D 
Sbjct: 566 PGLFSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRKPRQNNRRDRNERRDTRDN 625

Query: 752 QSGNDAEDDDAEGDDDGVETDEAGADSDENGANEAA----NADEDGKRKRRRRGKR--GG 805
           ++G D  +   +   +  +T +  A++ +    E A      DE  +  RR R +R    
Sbjct: 626 RAGRDGGESRDDNRRNRRQTQQQNAEARDTRQQETAEKVKTGDEQQQTPRRERSRRRNDD 685

Query: 806 RRNRDDALDAAGADGETEGEGAEGEEVSTAAPVTEEPA-------TAAEVVEGVVADVVA 858
           +R     + A   + +   E  + E V    P  ++         T + VVE V   VV 
Sbjct: 686 KRQAQQEVKALNREEQPVQETEQEERVQQVQPRRKQRQLNQKVRFTNSAVVETVDTPVVV 745

Query: 859 E--------EAPKKPRRTRKAKTKTETETEEAPKAETVETVEP 893
           +        E P    RT  AK       + AP+ +  ++VEP
Sbjct: 746 DEPRPVENVEQPVPAPRTELAKVDLPVVADIAPEQD--DSVEP 786



 Score = 86.3 bits (212), Expect = 1e-20
 Identities = 40/76 (52%), Positives = 54/76 (71%)

Query: 4  KMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYGG 63
          +MLI+A+ +EE RV +V G R+ + D ES   +Q + NIY  K+TR+EPSL+AAFVDYG 
Sbjct: 3  RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62

Query: 64 NRHGFLAFAEIHPDYY 79
           RHGFL   EI  +Y+
Sbjct: 63 ERHGFLPLKEIAREYF 78