Pairwise Alignments
Query, 977 a.a., ribonuclease E from Agrobacterium fabrum C58
Subject, 1061 a.a., ribonuclease E from Escherichia coli ECRC101
Score = 353 bits (907), Expect = e-101
Identities = 250/704 (35%), Positives = 360/704 (51%), Gaps = 71/704 (10%)
Query: 269 IQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITQPTDR 328
I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I + DR
Sbjct: 90 IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDDR 148
Query: 329 KRLKEIARDLEVPQGMGVILRTAGANRTRVEIKRDFEYLMRLWENVRTLTLNSTAPCLVY 388
LKE LE+P+GMG+I+RTAG ++ ++ D + ++ WE ++ + AP L++
Sbjct: 149 TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH 208
Query: 389 EEGSLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKML-MPSHAKVVQPYRDIHPIFSR 447
+E ++I R+ RD +DI EI++ + A+ + L P + ++ Y P+FS
Sbjct: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSH 268
Query: 448 SGIEAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHSIEETALTTNLEAAE 507
IE+Q++ Q +V L SGG ++I+ TEAL AID+NS R+TR IEETA TNLEAA+
Sbjct: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328
Query: 508 EVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEMS 567
E+ARQLRLRDL GL+VIDFIDM R+ R+VE +L++ ++ DRARIQ+ IS FGLLEMS
Sbjct: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388
Query: 568 RQRIRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGVEEYLLRNTTHNITVRCTPETA 627
RQR+ S+ ES+ VC C GTG VR S++L +LR +EE L+ T + A
Sbjct: 389 RQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIA 448
Query: 628 LYLLNHKRGSIVDYEGR-FGVAIIIAADSSVGAQHFAIDRGEAVENPVKIESLIQMLPSF 686
YLLN KR ++ E R GV +I + + H+ + R V + +L MLP
Sbjct: 449 SYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLR---VRKGEETPTLSYMLPKL 505
Query: 687 VEEEDDIVIEVE--EDEEEEEIVKAESAQPRQQPQGDNGEDGKR-KRKRRRRRRGKGGQN 743
EE + E E E + E+ A A P P E +
Sbjct: 506 HEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPATP 565
Query: 744 EQNGALDGQSGNDAEDDDAEGDDDGVETDEAGADSDENGANEAANADEDGKRKR-RRRGK 802
Q G L G ++ +G + + A A+ +R++ RR+ +
Sbjct: 566 AQPGLLSRFFG-------------ALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPR 612
Query: 803 RGGRRNRDDALD-----AAGADGETEG---------EGAEGEEVSTAAPVTEEPATAAEV 848
+ RR+R++ D G+D E + AE E A VTE+ TA E
Sbjct: 613 QNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETREGRQQAEVTEKARTADE- 671
Query: 849 VEGVVADVVAEEAPKKPRRTR------------KAKTKTETETEEAPKAETVETVEP--- 893
++AP++ R R KA E +E + E V V+P
Sbjct: 672 ----------QQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRK 721
Query: 894 -------VIIEPVVVEATVVDVAIEEVGEASAGLAPGADVPGTE 930
V E V E TVV EE A+ + A P TE
Sbjct: 722 QRQLNQKVRYEQSVAEETVVAPVAEET-VAAEPIVQEAPAPRTE 764
Score = 86.3 bits (212), Expect = 1e-20
Identities = 40/76 (52%), Positives = 54/76 (71%)
Query: 4 KMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYGG 63
+MLI+A+ +EE RV +V G R+ + D ES +Q + NIY K+TR+EPSL+AAFVDYG
Sbjct: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62
Query: 64 NRHGFLAFAEIHPDYY 79
RHGFL EI +Y+
Sbjct: 63 ERHGFLPLKEIAREYF 78
Score = 43.5 bits (101), Expect = 8e-08
Identities = 45/207 (21%), Positives = 73/207 (35%), Gaps = 30/207 (14%)
Query: 698 EEDEEEEEIVKAESAQPRQQPQGDNGEDGKRKRKRRRRRRGKGGQNEQNGALDGQSGNDA 757
E E+ KAE+ RQQ + ++ +R R RR R + + N + ++ A
Sbjct: 587 ETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQA 646
Query: 758 EDDDAEGDD--DGVETDEAGADSDENGANEAANADEDGKRKRRRRGKRGGRRNRDDALDA 815
+ AE + E E +DE + R+ R R + +R A
Sbjct: 647 QQQTAETREGRQQAEVTEKARTADE----------QQAPRRERSRRRNDDKRQAQQEAKA 696
Query: 816 AGADGETEGEGAEGEEVSTAAP----------------VTEEPATAAEVVEGVVADVVAE 859
+ ++ E + E V P V EE A E V A+ + +
Sbjct: 697 LNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEETVVAPVAEETVAAEPIVQ 756
Query: 860 EAPKKPRRTRKAKTKTETETEEAPKAE 886
EAP RT K + AP+ +
Sbjct: 757 EAPAP--RTELVKVPLPVVAQTAPEQQ 781