Pairwise Alignments

Query, 977 a.a., ribonuclease E from Agrobacterium fabrum C58

Subject, 1051 a.a., ribonuclease E from Dickeya dianthicola ME23

 Score =  363 bits (933), Expect = e-104
 Identities = 235/637 (36%), Positives = 341/637 (53%), Gaps = 36/637 (5%)

Query: 269 IQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITQPTDR 328
           I++V++  Q ++VQV KEERGNKGAALTT++SLAG Y VLMPN  R GGISR+I +  DR
Sbjct: 90  IKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDDR 148

Query: 329 KRLKEIARDLEVPQGMGVILRTAGANRTRVEIKRDFEYLMRLWENVRTLTLNSTAPCLVY 388
             LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ WE ++      +AP L++
Sbjct: 149 TELKEALGSLELPDGMGLIVRTAGVGKSADALQWDLAFRLKHWEAIKKAAEGRSAPFLIH 208

Query: 389 EEGSLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKML-MPSHAKVVQPYRDIHPIFSR 447
           +E ++I R+ RD    DI EI++   +    AK+ +  L  P     ++ Y    P+FS 
Sbjct: 209 QESNVIVRAFRDYLRPDIGEILIDNPKILELAKEHIAALGRPDFGSKIKLYTGEIPLFSH 268

Query: 448 SGIEAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHSIEETALTTNLEAAE 507
             IE+Q++   Q +V L SGG ++I+ TEAL AID+NS R+TR   IEETA  TNLEAA+
Sbjct: 269 YQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328

Query: 508 EVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEMS 567
           E+ARQLRLRDL GL+VIDFIDM   R+ R VE +L+D ++ DRARIQ+GRIS FGLLEMS
Sbjct: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQDRARIQIGRISRFGLLEMS 388

Query: 568 RQRIRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGVEEYLLRNTTHNITVRCTPETA 627
           RQR+  S+ ES+  VC  C GTG +R   S++L +LR +EE  L+  T  +        A
Sbjct: 389 RQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEEALKENTKEVHAIVPVPIA 448

Query: 628 LYLLNHKRGSIVDYEGRFG-VAIIIAADSSVGAQHFAIDRGEAVENPVKIESLIQMLPSF 686
            YLLN KR ++   E R G V  II     +   H+++ R   V    + ++L  MLP  
Sbjct: 449 SYLLNEKREAVNAIEKRQGDVRAIIVPHDGMETPHYSVLR---VRKGEEKQTLSYMLPQL 505

Query: 687 VEEEDDIVIEVEEDE----EEEEIVK--AESAQPRQQPQGDNGEDGKRKRKRRRRRRGKG 740
           ++ E    +E +  E    E+  +         P +          K +++     RG  
Sbjct: 506 LDVESQPSLEEQAPERRVPEQPALASFTMSDIPPAETKPASVVAAPKAEKQPSSSERGLF 565

Query: 741 GQNEQNGALDGQSGNDAEDDDAEGDDDGVETDEAGADSDENGANEAANADEDGKRKRRRR 800
           G+    GAL G     A+  +        ET EA +D  E       N  + G+R+R R 
Sbjct: 566 GRFV--GALKGIFAAPADVKEKP-----AETVEATSDEQEQKQERRNNRRQSGRRERPRE 618

Query: 801 GKRGGRRNRDDALDAAGADGETEGEGAEGEEVSTAAPVTEEPATAAEVVEGVVADVVAEE 860
            +    + R+       AD ET             APV E PA    V +    +   E+
Sbjct: 619 PRERDEQRRNKRTQPQNADVET-------------APVAEAPAQDKAVRD----EQRREQ 661

Query: 861 APKKPRRTRKAKTKTETETEEAPKAETVETVEPVIIE 897
             ++ RR ++ K + + + +E          E  + E
Sbjct: 662 RAERQRRRQEEKRQAQDDVKELNAVTEAADTEDAVAE 698



 Score = 84.7 bits (208), Expect = 3e-20
 Identities = 39/76 (51%), Positives = 54/76 (71%)

Query: 4  KMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYGG 63
          +MLI+A+ +EE RV +V G ++ + D ES   +Q + NIY  K+TR+EPSL+AAFVDYG 
Sbjct: 3  RMLINATQQEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62

Query: 64 NRHGFLAFAEIHPDYY 79
           RHGFL   EI  +Y+
Sbjct: 63 ERHGFLPLKEIAREYF 78



 Score = 35.4 bits (80), Expect = 2e-05
 Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 19/158 (12%)

Query: 126 VGIVAASETTDVAVTEEVAPVSEAVSEETAVEVVAE---------EAPAEEEKPKKRVRR 176
           VG +         V E+ A   EA S+E   +             E P E  +  ++ R 
Sbjct: 569 VGALKGIFAAPADVKEKPAETVEATSDEQEQKQERRNNRRQSGRRERPREPRERDEQRRN 628

Query: 177 PRAKKKTAEEIAAEAAEASSEDDGSTGGDMAAMVDTDTISEEVEGLRRGNDDDDDDDDDD 236
            R + + A+   A  AEA ++D         A+ D     +  E  RR  ++     DD 
Sbjct: 629 KRTQPQNADVETAPVAEAPAQDK--------AVRDEQRREQRAERQRRRQEEKRQAQDDV 680

Query: 237 HHEKEVIESVGAEDAMEEV--PDRVARKPRKQYRIQEV 272
                V E+   EDA+ E+  P +V ++ +++   Q+V
Sbjct: 681 KELNAVTEAADTEDAVAELEKPAQVMQRRQRRQLTQKV 718