Pairwise Alignments

Query, 977 a.a., ribonuclease E from Agrobacterium fabrum C58

Subject, 1065 a.a., ribonuclease E from Dickeya dadantii 3937

 Score =  358 bits (918), Expect = e-102
 Identities = 246/671 (36%), Positives = 347/671 (51%), Gaps = 47/671 (7%)

Query: 269 IQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITQPTDR 328
           I++V++  Q ++VQV KEERGNKGAALTT++SLAG Y VLMPN  R GGISR+I +  DR
Sbjct: 90  IKDVLREGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDDR 148

Query: 329 KRLKEIARDLEVPQGMGVILRTAGANRTRVEIKRDFEYLMRLWENVRTLTLNSTAPCLVY 388
             LKE    LE+P GMG+I+RTAG  ++   ++ D  + ++ WE ++       AP L++
Sbjct: 149 TELKEALGSLELPDGMGLIVRTAGVGKSADALQWDLAFRLKHWEAIKKAAEGRAAPFLIH 208

Query: 389 EEGSLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKML-MPSHAKVVQPYRDIHPIFSR 447
           +E ++I R+ RD    DI EI++   +    AK+ +  L  P  +  ++ Y    P+FS 
Sbjct: 209 QESNVIVRAFRDYLRPDIGEILIDNPKILELAKEHIAALGRPDFSSKIKLYTGEIPLFSH 268

Query: 448 SGIEAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHSIEETALTTNLEAAE 507
             IE+Q++   Q +V L SGG ++I+ TEAL AID+NS R+TR   IEETA  TNLEAA+
Sbjct: 269 YQIESQIESAFQREVRLPSGGSIVIDTTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328

Query: 508 EVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEMS 567
           E+ARQLRLRDL GL+VIDFIDM   R+ R VE +L+D ++ DRARIQ+GRIS FGLLEMS
Sbjct: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQDRARIQIGRISRFGLLEMS 388

Query: 568 RQRIRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGVEEYLLRNTTHNITVRCTPETA 627
           RQR+  S+ ES+  VC  C GTG +R   S++L +LR +EE  L+  T  +        A
Sbjct: 389 RQRLSPSLGESSHHVCPRCSGTGTIRDNESLSLSILRLIEEEALKENTKEVHAIVPVPIA 448

Query: 628 LYLLNHKRGSIVDYEGR-FGVAIIIAADSSVGAQHFAIDRGEAVENPVKIESLIQMLPSF 686
            YLLN KR ++   E R  GV  II     +   H+++ R   V    + ++L  MLP  
Sbjct: 449 SYLLNEKREAVNAIEKRQGGVRAIIVPHDGMETPHYSVLR---VRKGEEKQTLSYMLPQL 505

Query: 687 --VEEEDDIVIEVEEDEEEEEIVKA----ESAQPRQQPQGDNGEDGKRKRKRRRRRRGKG 740
             VE +     +V E    E+   A        P +          K +++     RG  
Sbjct: 506 LDVESQTSPDEQVPERRVPEQPALASFTMSDIPPAETKPAPVVAAPKEEKQPASSERGLF 565

Query: 741 GQNEQNGALDGQSGNDAEDDDAEGDDDGVETDEAGADSDENGANEAANADEDGKRKR--- 797
           G+    GAL G          A+      ET +  +D  E       N  + G+R+R   
Sbjct: 566 GR--LVGALKGIFA-----APADAGAKSAETVDVASDEQEQKQERRNNRRQSGRRERTRD 618

Query: 798 ---------RRRGKRGGRRNRD---------DALDAAGADGETEGEGAE-----GEEVST 834
                    +RR KR   +N D            D A  D +   + AE      EE   
Sbjct: 619 NREPRERDEQRRNKRTQPQNADIETAPVAEVSVQDKAARDEQRREQRAERQRRRQEEKRQ 678

Query: 835 AAPVTEEPATAAEVVE--GVVADVVAEEAPKKPRRTRKAKTKTETETEEAPKAETVETVE 892
           A    +E  T A   E  G   +  A+   ++ RR    K + +        AE +    
Sbjct: 679 AQTEVKELNTVAADTEDTGAEQEKPAQVMQRRQRRQLTQKVRVQDSDATVENAEALLPAA 738

Query: 893 PVIIEPVVVEA 903
           P + E  VVEA
Sbjct: 739 PYVQESSVVEA 749



 Score = 86.3 bits (212), Expect = 1e-20
 Identities = 40/76 (52%), Positives = 54/76 (71%)

Query: 4  KMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYGG 63
          +MLI+A+ +EE RV +V G R+ + D ES   +Q + NIY  K+TR+EPSL+AAFVDYG 
Sbjct: 3  RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62

Query: 64 NRHGFLAFAEIHPDYY 79
           RHGFL   EI  +Y+
Sbjct: 63 ERHGFLPLKEIAREYF 78