Pairwise Alignments

Query, 784 a.a., exoribonuclease from Agrobacterium fabrum C58

Subject, 857 a.a., exoribonuclease R from Pseudomonas putida KT2440

 Score =  403 bits (1035), Expect = e-116
 Identities = 277/787 (35%), Positives = 417/787 (52%), Gaps = 60/787 (7%)

Query: 36  VPSREVLLKFIADHPQQASKREIAKAFGLKGENRI-VLKALLKELEVDGMVHKSRKSLTR 94
           +PSRE++L+ +AD  + A++ E+AK FGL  E++I  L+  L+ +E DG +       TR
Sbjct: 22  IPSRELILQRLADRGEPAAREELAKEFGLYEEDQIEALRRRLRAMERDGQL-----IYTR 76

Query: 95  PGGLPPVTVLDITT------RDKDGELIGRPAEWPEDMGAAPAVLIRQSSQDRGKKAPAA 148
            G   PV  LD+        RD  G LI  P +  ED+  +P+ +      DRG  A  +
Sbjct: 77  RGTYAPVDKLDLICGRVSGHRDGFGFLI--PDDGSEDLFLSPSQMRLVFDGDRGL-ARVS 133

Query: 149 GLGDRILAKIFPSKDTVGPAYTARVVKLIDRRQNALLGVFKQTEGGGGRLMPIDRR-GEE 207
           G+  R        ++ V       +V++I R   +++G + + EGG G + P + +  +E
Sbjct: 134 GVDRR------GRREGV-------LVEVISRAHESVVGRYFE-EGGIGYVTPDNPKIQQE 179

Query: 208 MVIDPDGVGDAKDGDLIEVETSRNSGRYGLTRAKVLSVVGSVASEKAISMIAIYAHGIPH 267
           +++     G AK G  +E++ +         +  V+ V+G+  +      +A+ ++ IPH
Sbjct: 180 VLVTAGRNGGAKIGQFVEIKITHWPTPRFQPQGDVVEVIGNYMAPGMEIDVALRSYDIPH 239

Query: 268 IFPPNVLAEADAAKAAT----MSHREDWRDLPLITIDPADAKDHDDAVYAE-LDPSPDNP 322
           ++P +V+ EA   ++         R D R LP +TID  DA+D DDAVY E L       
Sbjct: 240 VWPNDVVKEARKFRSEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVYCEPLGKLRLFS 299

Query: 323 DGVIVTVAIADVSWYVRPGAPLDREALKRGNSVYFPDRVVPMLPERISNDLCSLKEGVDR 382
            G  + VAIADVS YVR G+ LD EA +RGNSVYFP+RVVPMLPE +SN LCSL   VDR
Sbjct: 300 GGWRLYVAIADVSSYVRLGSALDVEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHVDR 359

Query: 383 PALAVRMTFSKEGRKASHTFHRIMMKSAAKLSYQQAQAAIDGNPDDKTGTLLE------P 436
            A+   MT +K G+   + F+  ++ S A+L+Y +  + ++ +   +   L E      P
Sbjct: 360 LAMVCEMTMNKAGQMVDYQFYEGVIHSHARLTYNKVSSMLEHSRTREGKALREEYKEVVP 419

Query: 437 ILKPLWHAYEVMKRGRDRRQPLELDMPERKIQLRPDGTVDKVVIPERLDAHKLIEEMMIQ 496
            LK L++ Y+V+   R  R  ++ +  E +I    +  + ++    R DAHKLIEE M+ 
Sbjct: 420 DLKNLYNLYKVLVEARHTRGAIDFETQETRIIFGEERKIAEIRPTVRNDAHKLIEECMLA 479

Query: 497 ANVAAAETLETKKQRLVYRVHDAPTLSKQEVLREFLGTIGISMAKGVAMRANSFNGILAR 556
           ANVA AE L+      +YRVHD P   + E LR FLG +G+S+ KG       +  +LA 
Sbjct: 480 ANVATAEFLQKHGVPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDPSPKDYQALLAS 539

Query: 557 ALDTPHQIMVNEMVLRSQSQAIYSPENIGHFGLNLMKYAHFTSPIRRYADLIVHRAL--- 613
               P   ++  ++LRS SQA+YS EN GHFGLN   Y HFTSPIRRY DL+VHRA+   
Sbjct: 540 IAGRPDFHLIQTVMLRSLSQAVYSTENNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSI 599

Query: 614 ------------VGSLGLGEGGITPQEEATLDDIAAEISTFERRAMAAERDTVNRLIAHH 661
                        G++ + +  I P +E TL+ +  + S  ERRA  A RD VN L    
Sbjct: 600 IRSKVDTPHVKRAGAMSIPKARIYPYDENTLEQLGEQCSMTERRADEATRDVVNWLKCEF 659

Query: 662 LSERVGEEFEGRVGGVTKAGLFVALPQFGADGFVPISTLGTDYFFYDEAHQALTGEKTGL 721
           + +RVGE F G +  VT  GLFV L     +G V +S L  DY+ +D  H  L GE+TG 
Sbjct: 660 MKDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVSALPGDYYHFDPVHHRLAGERTGR 719

Query: 722 GYQLGDTVQVRLAEAVPLAGALRFEMLSPGRKMPVGSR---SFHKAGRRTSRPGAKPGTR 778
            ++LGDT++V++         + FE+       P+G +   +   A +   +P  +    
Sbjct: 720 SFRLGDTIEVKVMRVDLDERKIDFEVSEKTLAAPIGRKQRGAAPVAEKAEQQPATEAKAT 779

Query: 779 P-PRGRR 784
           P PR R+
Sbjct: 780 PKPRSRK 786