Pairwise Alignments

Query, 784 a.a., exoribonuclease from Agrobacterium fabrum C58

Subject, 722 a.a., 3'-to-5' exoribonuclease RNase R from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  360 bits (923), Expect = e-103
 Identities = 236/672 (35%), Positives = 338/672 (50%), Gaps = 44/672 (6%)

Query: 152 DRILAKIFPSKDTVGPAYTARVVKLIDRRQNALLGVFKQTEGGGGRLMPIDRR-GEEMVI 210
           DR+ A+I        P    RV ++++R  + ++G   Q E G   + P D+R G++++I
Sbjct: 5   DRVKARIVRLDRKGRPE--GRVTEIVERSDSPIIGRLLQ-ESGVWLVAPEDKRYGQDVLI 61

Query: 211 DPDGVGDAKDGDLIEVETSRNSGRYGLTRAKVLSVVGSVASEKAISMIAIYAHGIPHIFP 270
                G AK G ++ V+ +     YG    +V  V+G +        IA+  +G+PH F 
Sbjct: 62  PKGATGSAKPGQVVVVQLTEPPALYGQPVGRVKEVLGEIDDPGMEIEIAVRKYGVPHEFS 121

Query: 271 PNVLAEA----DAAKAATMSHREDWRDLPLITIDPADAKDHDDAVYAELDPSPDNPDGVI 326
              LA+A    D  +AA   HR D RD+PL+TID  DA+D DDAVY E         G  
Sbjct: 122 DAALAQARALPDHVRAADHKHRVDLRDVPLVTIDGEDARDFDDAVYCE-PAKVGKGKGWR 180

Query: 327 VTVAIADVSWYVRPGAPLDREALKRGNSVYFPDRVVPMLPERISNDLCSLKEGVDRPALA 386
           + VAIADVS YV  G+P+D +A  R  SVYFP RV+PMLPE++SN LCSL  GV+R  + 
Sbjct: 181 LLVAIADVSHYVETGSPIDVDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPGVERLCMV 240

Query: 387 VRMTFSKEGRKASHTFHRIMMKSAAKLSYQQAQAAIDGN--PDDKTGTLLEPILKPLWHA 444
             M  + +G   ++ F+  +M S A+ +Y +  A +     P+      L P L  L   
Sbjct: 241 CDMLVNAKGEVHAYQFYPAVMFSHARFTYTEVAAILQNTRGPEAAQRKALVPYLLNLHDV 300

Query: 445 YEVMKRGRDRRQPLELDMPERKIQLRPDGTVDKVVIPERLDAHKLIEEMMIQANVAAAET 504
           Y  +   R  R  ++ +  E +I     G ++K+V   R DAHKLIEE M+ ANV +A+ 
Sbjct: 301 YRALLAARGERGAVDFETTETQIVCDESGRIEKIVPRTRNDAHKLIEEAMLAANVCSADF 360

Query: 505 LETKKQRLVYRVHDAPTLSKQEVLREFLGTIGISMAKGVAMRANSFNGILARALDTPHQI 564
           ++  K   ++RVH+ PT  KQE+LR +L  +G+S   G   +   F  I     D P   
Sbjct: 361 IQQGKHTGLFRVHEGPTPEKQEILRNYLKAMGVSQTIGDNPKPGDFQAIANATKDRPEAQ 420

Query: 565 MVNEMVLRSQSQAIYSPENIGHFGLNLMKYAHFTSPIRRYADLIVHRALVGSLGL----- 619
            ++ M+LRS  QAIY+P N GHFGL    Y HFTSPIRRY DL+VHR +   L       
Sbjct: 421 QIHTMLLRSMQQAIYTPVNSGHFGLAFEAYTHFTSPIRRYPDLLVHRVIKAILARKRYEL 480

Query: 620 ------GEGGI----------------TPQEEATLDDIA-----AEISTFERRAMAAERD 652
                 GE                    P ++ + D +A        S  ERRA  A RD
Sbjct: 481 PNLPTPGEAHAKLSKRLASRVRPPVAGEPVKKPSADTLAWQAAGLHCSANERRADEASRD 540

Query: 653 TVNRLIAHHLSERVGEEFEGRVGGVTKAGLFVALPQFGADGFVPISTLGTDYFFYDEAHQ 712
               L   ++ E +GEEF G V  VT  GLFV L     +G V I+ LG +YF +DEA Q
Sbjct: 541 VEAWLKCKYMREHLGEEFSGVVTAVTSFGLFVTLDAMYVEGLVHITELGGEYFRFDEARQ 600

Query: 713 ALTGEKTGLGYQLGDTVQVRLAEAVPLAGALRFEMLSPGRKMPVGSRSFHKAGRRTSRPG 772
            L GE+TG+ Y LG  V+V+++        + F ++S    + + +    K G   +   
Sbjct: 601 ELRGERTGIRYALGTRVKVQVSRVDLDGRRIDFRLVSDNDDLVLRAMR-DKTGMSPASDN 659

Query: 773 AKPGTRPPRGRR 784
             P  R  + RR
Sbjct: 660 QAPPARAGKARR 671