Pairwise Alignments

Query, 784 a.a., exoribonuclease from Agrobacterium fabrum C58

Subject, 813 a.a., exoribonuclease R, RNase R from Escherichia coli BL21

 Score =  369 bits (946), Expect = e-106
 Identities = 263/767 (34%), Positives = 393/767 (51%), Gaps = 42/767 (5%)

Query: 36  VPSREVLLKFIADHPQQASKREIAKAFGLKGENRIV-LKALLKELEVDG-MVHKSRKSLT 93
           +PSRE +L+ +    + AS+ E+A    ++GE ++  L+  L+ +E DG +V   R+   
Sbjct: 18  IPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYA 77

Query: 94  RPGGLPPVTVLDITTRDKDGELIGRPAEWPEDMGAAPAVLIRQSSQDRGKKAPAAGLGDR 153
            P  L  V    I  RD  G L  R     +D+  +             ++      GD+
Sbjct: 78  LPERLDLVKGTVIGHRDGYGFL--RVEGRKDDLYLS------------SEQMKTCIHGDQ 123

Query: 154 ILAKIFPSKDTVGPAYTARVVKLIDRRQNALLGVFKQTEGGGGRLMPIDRR-GEEMVIDP 212
           +LA+   + D  G    AR+V+++  + + ++G +  TE G G ++P D R   +++I P
Sbjct: 124 VLAQPLGA-DRKGRR-EARIVRVLVPKTSQIVGRYF-TEAGVGFVVPDDSRLSFDILIPP 180

Query: 213 DGVGDAKDGDLIEVETSRNSGRYGLTRAKVLSVVGSVASEKAISMIAIYAHGIPHIFPPN 272
           D +  A+ G ++ VE ++   R      K++ V+G          IA+  H IP+I+P  
Sbjct: 181 DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA 240

Query: 273 VLAEADAAKAATMSH----REDWRDLPLITIDPADAKDHDDAVYAELDPSPDNPDGVIVT 328
           V  +    K          R D RDLPL+TID  DA+D DDAVY E         G  + 
Sbjct: 241 VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCE----KKRGGGWRLW 296

Query: 329 VAIADVSWYVRPGAPLDREALKRGNSVYFPDRVVPMLPERISNDLCSLKEGVDRPALAVR 388
           VAIADVS+YVRP  PLDREA  RG SVYFP +V+PMLPE +SN LCSL   VDR  +   
Sbjct: 297 VAIADVSYYVRPSTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCE 356

Query: 389 MTFSKEGRKASHTFHRIMMKSAAKLSYQQAQAAIDGNPD--DKTGTLLEPILKPLWHAYE 446
           MT S +GR   + F+  +M S A+L+Y +    + G+ D  ++   L++  L+ L + Y+
Sbjct: 357 MTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQDLREQYAPLVKH-LEELHNLYK 415

Query: 447 VMKRGRDRRQPLELDMPERKIQLRPDGTVDKVVIPERLDAHKLIEEMMIQANVAAAETLE 506
           V+ + R+ R  +  +  E K     +  ++++   +R DAHKLIEE MI AN++AA  +E
Sbjct: 416 VLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVE 475

Query: 507 TKKQRLVYRVHDAPTLSKQEVLREFLGTIGISMAKGVAMRANSFNGILARALDTPHQIMV 566
             K+  ++R+HD P+       R  L  +G+ +  G       +  +L    D P   M+
Sbjct: 476 KAKEPALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEML 535

Query: 567 NEMVLRSQSQAIYSPENIGHFGLNLMKYAHFTSPIRRYADLIVHRALVGSLGLGEG--GI 624
             M+LRS  QAIY PEN GHFGL L  YAHFTSPIRRY DL +HRA+   L   +G  G 
Sbjct: 536 QTMLLRSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGN 595

Query: 625 TPQ------EEATLDDIAAEISTFERRAMAAERDTVNRLIAHHLSERVGEEFEGRVGGVT 678
           T +          +  +    S  ERRA  A RD  + L    + ++VG  F+G +  VT
Sbjct: 596 TTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVT 655

Query: 679 KAGLFVALPQFGADGFVPISTLGTDYFFYDEAHQALTGEKTGLGYQLGDTVQVRLAEAVP 738
             G FV L     DG V +S+L  DY+ +D+  Q L GE +G  Y+LGD V+VR+     
Sbjct: 656 GFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNM 715

Query: 739 LAGALRFEMLSPGR-KMPVGSRSFHKAGRRTSRPGAKPGTRPPRGRR 784
               + F ++S  R    VG  +  KA  +    G K G R   G++
Sbjct: 716 DERKIDFSLISSERAPRNVGKTAREKA--KKGDAGKKGGKRRQVGKK 760