Pairwise Alignments

Query, 1167 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

Subject, 1428 a.a., DNA-directed DNA polymerase III (polc) from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  671 bits (1732), Expect = 0.0
 Identities = 428/1203 (35%), Positives = 647/1203 (53%), Gaps = 85/1203 (7%)

Query: 13   ETLKTPGFVHLRVHSAYSLLEGALPLKKIMSKAVGDGQPAIAITDTNNLFVALEFSEKAR 72
            + + TP F HL VH+ YS+L+    +  ++++A     PAIA+TD  N+  A  F + A 
Sbjct: 239  DLVDTP-FSHLHVHTQYSILQATSEIPAMVARAKEFNMPAIAMTDHGNMMAAFHFVKAAM 297

Query: 73   DEGLQPIIGCQLSIDMQDAAEDRRNHNSHLQKLPAI--VLLAANAEGYERLVDLVSRAYL 130
            D  ++P++GC+ +I         R+H +  QK      VLLA N  GY  L  L S AY 
Sbjct: 298  DNDIKPVVGCEFNIC--------RDHQNKSQKDDGFQAVLLAKNKTGYHNLAKLASFAYT 349

Query: 131  DGEGGSHSVHITRAWLEEASNAGLIALTGASGGPVDMALKEGHAAQAKERLLTLKSLFGD 190
              +G  +   I +  L +     +IA TG   G V   +      QA+E  +  K  FG+
Sbjct: 350  --QGFYYVPRIDKELLVQYKG-DIIATTGGLWGEVPFLILNVGETQAEEAFVWWKEQFGE 406

Query: 191  RLYIELQRQSGYDRSHERR-LIGLAYEHDIPLVATNEAFFPSKADYEAHDALMAVAHNAI 249
              Y+EL R    +       L+  A ++D+   A N  ++ +K D +AHD L+ V     
Sbjct: 407  DFYVELNRHGIPEEEKVNEVLLRFAQKYDVKYFAANNTYYNTKNDAKAHDILLCVKDGEK 466

Query: 250  VSDDSR--------FRL---TPDHYLKSRDEMTALFADLPEALENTVEIALRCSYVLKKR 298
            V    R        FR      + Y+K+ +EM  LFADLPEA+E T EI  +       R
Sbjct: 467  VDKPKRYIGKKGREFRYGFPNEEFYIKTPEEMKKLFADLPEAIECTNEIIEKVEPYKLAR 526

Query: 299  GPILPRFT------GASDDPEAAERAETEELRRQAVEGLDQRLSALGMAPGYTEQDYRER 352
              +LP+F          DD +  +R E   LR    EG  +R       P  TE+  RER
Sbjct: 527  EVLLPKFNIPEQFQDPQDDEDGGKRGENAYLRHLTYEGAKRRY------PEITEE-IRER 579

Query: 353  LDFELGVISRMKFPGYFLIVADFIKWAKQQDIPVGPGRGSGAGSLVAYALTITDVDPLRF 412
            LDFEL +I+   +PGYFLIV DF   A++  + VGPGRGS AGS VAY + IT+VDP+ +
Sbjct: 580  LDFELSIIANTGYPGYFLIVQDFTTAAREMGVSVGPGRGSAAGSAVAYCIGITNVDPVAY 639

Query: 413  SLLFERFLNPERVSMPDFDIDFCQDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRD 472
             LLFERFLNP+RVS+PD DIDF    R++VI YV  KYG  QVAQIIT+G++ A++A+RD
Sbjct: 640  DLLFERFLNPDRVSLPDIDIDFDDHGRQKVIDYVIEKYGANQVAQIITYGTMAAKSAIRD 699

Query: 473  VGRVLEMPYGQVDKICKLVPNNPANP-----TPLSKAIEEEPRLQEEADK---------- 517
              R L++P    D++ KLVP+              K  E+     E  DK          
Sbjct: 700  TARALDLPLSDADRLAKLVPDIKLKALFGLANDRGKLAEKLKNNSENIDKAYELINISKG 759

Query: 518  EPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVE 577
               +++ ++ A+ +EG  R+   HA G++I    ++  VP+     SDM  TQF+   VE
Sbjct: 760  NDDLSKTINQAKILEGSVRNTGIHACGVIITPDDITNFVPVALAKDSDMYCTQFDNSVVE 819

Query: 578  SAGLVKFDFLGLKTLTVLKVAVDFVAKR-GIKVDLAAIPLEDAKTYEMLSRGETIGVFQV 636
            +AGL+K DFLGLKTLT++K AV  V +R GI++D    P++D +TYE+  RGET+G+FQ 
Sbjct: 820  NAGLLKMDFLGLKTLTLIKDAVRIVKERHGIELDPENFPIDDKETYELFQRGETVGIFQY 879

Query: 637  ESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYNARKHGEEELESIHPTIDHLLK 696
            ES GM+K +  ++P    D+IA+ ALYRPGP+E IP +  RKHG E +      ++  L+
Sbjct: 880  ESPGMQKYMRELKPTVFADLIAMNALYRPGPLEYIPSFIKRKHGLEPIAYDLDDMEEYLQ 939

Query: 697  ETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKEEMDQQRERFVDGAIKNGVSK 756
            ET G+ VYQEQVM ++Q L+G++ GEAD+LR+AMGKK+++ +D+ + +FV+ A + G  K
Sbjct: 940  ETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKLRDVLDKMKPKFVNQAAEKGHDK 999

Query: 757  PQANTIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYPVEFLAASMTLDMANTEKLN 816
             +   I+     FA+Y FNKSH+  YA V+YQTAY+KAHYP E++A+ ++ +M +  ++ 
Sbjct: 1000 AKLEKIWKDWEAFASYAFNKSHSTCYAWVAYQTAYLKAHYPAEYMASVLSNNMNDITQVT 1059

Query: 817  DFRQDAGRLGIEVVAPSVQTSFRQFETG-ENRIYYSLAAIKGVGEGAVEHIVQVRGEK-P 874
             F ++  R+GIEV+ P V  S   F    E +I + LAAIKG G  AV  +++ R E  P
Sbjct: 1060 FFMEECKRMGIEVLGPDVNESKDGFTVNQEGQIRFGLAAIKGAGGAAVHSVIEERAENGP 1119

Query: 875  FTSLEDFCLRIDPKQINRRVLESLINAGAFDCF-GRDRAELIGG-------LDRIIGYAQ 926
            + S+ DF  R++ + +N++ LESL  AG FDCF    R + +         +++ + YAQ
Sbjct: 1120 YKSIFDFTQRVNLRSVNKKTLESLAMAGGFDCFPDHHRRQYLEAPENDATLIEKAVKYAQ 1179

Query: 927  MAQNNRTIGQSDMFGSGGGTGPEKLILPAFQSWLPSEKLIREYQVLGFYLTAHPLDTYRP 986
                     Q  +FG G G       +   + +   ++L  E +V+G Y++ HPLD ++ 
Sbjct: 1180 KKAQEAESSQVSLFGGGSGMEVPMPSITPIEPFSQLQQLNIEKEVVGLYISGHPLDQFKV 1239

Query: 987  LLEKLRVQNFADFSAAVKQGASTVGRL--AGTVTGKQERKTRTGNKMGIVTFSDASGQYE 1044
              +       ++F  A  +   T G +  AG VT    R T+ GN  G +T  D +G + 
Sbjct: 1240 EFDSFTNTPLSEF--ANTEALKTKGEIKAAGVVTSFAHRTTKNGNPFGTLTLEDYNGGHT 1297

Query: 1045 AVLFSEGLAQFRDLLEVGKSLVI--NVQAEE-RPEGIGLRIQTAQSLEEKSVQMQKALRV 1101
              LF E   ++++    G  L +  +VQ +   P+ +  ++     L E   +M K LR+
Sbjct: 1298 FFLFGEDYIKYKEYFMTGWFLYVTGSVQGKRWNPDELEFKVGNIMLLNEVRGKMVKGLRL 1357

Query: 1102 YVR-DSGPLKTVARHLNTKGDGSVYFIVIKDEGSREIEVELTEKYRISPEIAAALRSAPG 1160
             +  D   L  + R         +  I  K +G  ++ + +T+   +   IA  LRS   
Sbjct: 1358 NISLDDLTLDLMER---------LEAITSKYKGEAKLYINVTD---VKERIAVDLRSTKF 1405

Query: 1161 VVD 1163
            ++D
Sbjct: 1406 LID 1408