Pairwise Alignments

Query, 434 a.a., NADH ubiquinone oxidoreductase chain F from Agrobacterium fabrum C58

Subject, 452 a.a., NADH oxidoreductase (quinone), F subunit from Pseudomonas sp. S08-1

 Score =  312 bits (800), Expect = 1e-89
 Identities = 166/391 (42%), Positives = 235/391 (60%), Gaps = 6/391 (1%)

Query: 27  GHWDGTKQIIEKGRDWIINEMKASGLRGRGGAGFPTGLKWSFMPKENDGRPHYLVVNADE 86
           G+    K + E  +  I+  +K SGL+GRGGAGFPTG+KW  MP +      YL+ NADE
Sbjct: 45  GYAAARKALSEMAQADIVQTVKDSGLKGRGGAGFPTGVKWGLMPADESMNIRYLLCNADE 104

Query: 87  SEPGTCKDREILRNDPHTLIEGCVIAGFAMGAHTAYIYVRGEYMREREALQAAIDECYDA 146
            EP T KDR ++   PH L+EG +I+  A+ A+  YI++RGEY+     L  AIDE   A
Sbjct: 105 MEPNTWKDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAAANLNRAIDEAKAA 164

Query: 147 GLLGKN-NKNGWDYDIYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANMGLYGCP 205
           GLLGKN   +G+D++++VH GAG YICGEETAL+ SLEG++  PR KPPFPA +G++G P
Sbjct: 165 GLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKP 224

Query: 206 TTVNNVESIAVAPTILRRGASWFSSIGRP--NNVGTKLFMVSGHVERPCTFEDALGLSFR 263
           T VNNVE++   P I+  G  W+ ++ RP   ++GTKL   SG V+ P  +E   G+  R
Sbjct: 225 TCVNNVETLCNVPAIVANGVDWYKTLARPGSEDMGTKLMGFSGKVKNPGLWELPFGIPAR 284

Query: 264 ELIEHHCGGIRGGWDNLLGVIPGGASCPIVRGEDMKDAIMDFDGMREVKSSFGTGGMIVM 323
           EL E + GG+R G+  L    PGGA    +  E + DA M   G+ +V +  GTG  + +
Sbjct: 285 ELFEDYAGGMRDGY-KLKCWQPGGAGTGFLLPEHL-DAAMFAGGIAKVGTRMGTGLALAV 342

Query: 324 DKSTDVIKAIARIAAFFKHESCGQCTPCREGTGWMWRVLERMVKGNAQKREIDMLFEVTK 383
           D S +++  +  +  FF  ESCG CTPCR+G  W  ++L  +      +++ID L  +  
Sbjct: 343 DDSVNMVSLLRNMEEFFARESCGWCTPCRDGLPWSVKILRALENRQGTQQDIDTLLGLVN 402

Query: 384 QI-EGHTICALGDAAAWPVQALIRNFRPEIE 413
            +  G T CA    A  P+ + I+ FRPE E
Sbjct: 403 FLGPGKTFCAHAPGAVEPLGSAIKYFRPEFE 433