Pairwise Alignments

Query, 497 a.a., ABC transporter, substrate binding protein from Agrobacterium fabrum C58

Subject, 543 a.a., Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2) from Variovorax sp. SCN45

 Score =  125 bits (313), Expect = 5e-33
 Identities = 131/522 (25%), Positives = 208/522 (39%), Gaps = 47/522 (9%)

Query: 5   ALLTTCAIAG-AFGANAANAGTVTYDDNYAVKAAWQ-MASDDSTLGMRVGCYEGLVRIGF 62
           ALL   AIA       A +A T+ Y    + +  +  M +  ++  +    Y  +V    
Sbjct: 15  ALLAPTAIAALTLACGAVSAKTLVYCSEGSPENFYPGMNTTGTSFDVTTQVYNTIVEFER 74

Query: 63  D-MRLEASLAESWK-QTEPKVWEFKLRKGVK-------FQNGEDFNAAAAVNALTLLLKA 113
              ++   LAE W    +  V+ F LRKGVK       F+   DFNA   +  L    K 
Sbjct: 75  GGTKVVPGLAEKWDISADGTVYTFHLRKGVKWHTTSKSFKPTRDFNADDFIFMLERQWKE 134

Query: 114 SVPARAFS------------PKQIAGVEAVGDDVVKVTTIEPSVLLPAQLASP------- 154
           S P    +            PK +  V+ + D  VK+   +P     A LA         
Sbjct: 135 SDPFFKVTSQNHSYFNDMGMPKLLKTVDRIDDYTVKIVLNQPEAPFLANLAMQYAGIQSK 194

Query: 155 --ATAILAPSAYKDGKINPIGTCTGPFEITEVDPNQYMVMKANHGYWGGMPKLDGGRVNF 212
             A A+L     +    +PIGT  GPF + +   +  +  KA   YWGG  K+D      
Sbjct: 195 EYAIAMLKAGTPEKVDQDPIGT--GPFYLVQYQKDAVIRFKAFPQYWGGKAKIDDLVFAI 252

Query: 213 VPDADTRATQIRTGEVQISRLVPPWSIKTIESTKGVKVAAISVPRITELLLNNSRPPFKD 272
            PDA  R  +++ GE  +     P  +  I     V+V       +  L  N ++ PF D
Sbjct: 253 TPDASVRWAKLQKGECHVMPYPNPADLDAIRKDPNVQVLEQPGLNVGYLSYNTTKKPFDD 312

Query: 273 KKVREAVRAAIDAAGIASSIYEEKVKSASMPFAPGQPWAAEEPT--STYDVAKAKSLLKE 330
            +VR+A+  AI+   I   +Y     +A  P  P   W+  +      YD   AK LL +
Sbjct: 313 VRVRKAINMAINKKAIIDGVYLTTGVAAKNPIPPTM-WSYNDAVKDDPYDPEAAKKLLAQ 371

Query: 331 AGIAPG---SLKVTILAYTMKTELKDVAAIIQAQLEEIGIKVDVRVAEYSAIEPDLLAGN 387
           AG   G    L    +        K +A ++QA L +I +K +++  E+      L AG 
Sbjct: 372 AGYPDGFSTDLWAMPVQRPYNPNAKRIAELMQADLAKINVKAEIKSFEWGEYRKRLQAGE 431

Query: 388 FDMVLLSRGYATDVIEPAGYLNADYSCTGT-----YNISHYCNEETDKLIKAAYAEVEPA 442
             M +L  G+  D  +P  +L     C         NIS +C +  + L+  A + V+ A
Sbjct: 432 HQMGML--GWTGDNGDPDNFLYTLLGCASAKSASGSNISKFCYQPYEDLVVKAKSTVKQA 489

Query: 443 KRYAIYGQIAKKIYDDAVSVFLVHETVFDAYSEKLENFRPHP 484
            R A+Y +      + A    + H        +++ +F+  P
Sbjct: 490 DRDALYKKAQVIFKEQAPWFTIAHAVQLKPVRKEVVDFKLSP 531