Pairwise Alignments

Query, 497 a.a., ABC transporter, substrate binding protein from Agrobacterium fabrum C58

Subject, 541 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  124 bits (312), Expect = 6e-33
 Identities = 130/467 (27%), Positives = 206/467 (44%), Gaps = 55/467 (11%)

Query: 70  LAESWKQTEP-KVWEFKLRKGVKFQNGEDFNAAAAVNALTLL------LKASVPARAFSP 122
           LA  W+ ++  K + F LR+GVKF   + F  +   NA  +L      L    P R   P
Sbjct: 75  LATKWEVSDDGKTYTFHLREGVKFHTTDYFKPSRPFNADDVLFTFNRMLDKDNPFRKAYP 134

Query: 123 ------------KQIAGVEAVGDDVVKVTTIEPSVL----LPAQLASPATAILAPSAYKD 166
                       K IA VE + +  VK T  E        L    AS  +A  A    K+
Sbjct: 135 TEFPYFTDMGMDKNIAKVEKLDEHTVKFTLNEVDAAFIQNLAMSFASIQSAEYADQLLKN 194

Query: 167 GKI-----NPIGTCTGPFEITEVDPNQYMVMKANHGYWGGMP-KLDGGRVNFVPDADTRA 220
           GK       PIGT  GPF  ++   +  +  K N  YW     K+D        DA  R 
Sbjct: 195 GKAADINQKPIGT--GPFVFSKYQKDAQIRFKGNKDYWQPEDVKIDNLIFAITTDASVRM 252

Query: 221 TQIRTGEVQISRLVPPWSIKTIESTK--------GVKVAAISVPRITELLLNNSRPPFKD 272
            +++  E Q++    P  I+ +++ K        G  +  I+   + ++  +N   P   
Sbjct: 253 QKLKKNECQVTLFPRPADIEPLKADKNLQMPQQAGFNLGYIAYNVMDKIKGSNEANPMAQ 312

Query: 273 KKVREAVRAAIDAAGIASSIYEEKVKSASMPFAPGQPWAAEEPT--STYDVAKAKSLLKE 330
            KVR+A+  A+D   I  S+Y+   + A     P Q W+ ++    + +D  KAK LLKE
Sbjct: 313 LKVRQALDMAVDKKKIIESVYQGAGQLAVNAMPPTQ-WSYDDSIKDAAFDPEKAKQLLKE 371

Query: 331 AGIAPGSLKVTILAYTMKT----ELKDVAAIIQAQLEEIGIKVDVRVAEYSAIEPDLLAG 386
           AGI  G+ ++T+ A  ++       K +A ++Q+   +IGIK  +   E+         G
Sbjct: 372 AGIKEGT-EITLWAMPVQRPYNPNAKLMAEMLQSDWAKIGIKAKIVSYEWGEYIKRSKGG 430

Query: 387 NFDMVLLSRGYATDVIEPAGYLNADYSCTGT--YNISHYCNEETDKLIKAAYAEVEPAKR 444
               +L+  G++ D  +P  +L   Y C      N S +C +  D LIK A A  + AKR
Sbjct: 431 EQGAMLI--GWSGDNGDPDNWLGTLYGCDAVDGNNFSKWCYKPYDDLIKQAKATSDQAKR 488

Query: 445 YAIYGQIAKKIYDDAVSVF-LVHETVFDAYSEKLENFR--PHPINYF 488
             +Y Q A+ I  + V +  + H TV+   S K+++F+  P  +N F
Sbjct: 489 TELY-QKAQHILKEQVPITPIAHSTVYQPMSAKVKDFKISPFALNSF 534