Pairwise Alignments

Query, 645 a.a., GGDEF family protein from Agrobacterium fabrum C58

Subject, 698 a.a., histidine kinase from Pseudomonas simiae WCS417

 Score =  131 bits (329), Expect = 1e-34
 Identities = 165/560 (29%), Positives = 241/560 (43%), Gaps = 55/560 (9%)

Query: 112 PALFGAAFLDMSVISAFGIAIYGWMRRR----RLTELGMREIAGVFAI------RIFAAL 161
           P LFGA+ L     S   + I   +RR     RL   G   + G FAI       + AA 
Sbjct: 139 PTLFGASLLIAVAASGAALWIAHNLRRNAPYVRLARGGAAVVMG-FAIVGMHYTGMAAAR 197

Query: 162 FAICLTYGLGMVGQDVFLSNVG--RRIVGATVGLPMIACLFLLLRSEARAREAVKKREVA 219
           FA     G  + G    LS  G    ++  T+ +  IA L  LL +   AR AV    + 
Sbjct: 198 FADDSVCGAALNG----LSGKGLDNLVLVTTLAVLAIALLTSLLDARLEARTAVLADSLT 253

Query: 220 ---------ARTDSLTGLPNRRALKDHIE--MTTRQAPAVPHALLLIEIVNIADVAAYQG 268
                    A  D LTGLPNR  L D I+  M   +      AL+ I++     V    G
Sbjct: 254 LANQELTHLALHDMLTGLPNRTLLADRIQQAMQVVKEQGGCFALMFIDLDGFKPVNDAFG 313

Query: 269 DDWADLFWPKLAREICDGENGLLSKFNDPRSFMFGDATLAVV--IEGVSLEKSESAGLVL 326
               D    +L RE+     GL  +  D RS      TLA +   E V L +       L
Sbjct: 314 HHMGD----QLLREV-----GLRLR-EDLRS----QDTLARIGGDEFVLLVQLTQPDDAL 359

Query: 327 HLHEGLIAFFRSAEAGPVPHLKIGAA-NLEMV--SHQNVASFLRHLSLALRRSE----NP 379
            L E  +     A       LKI A+  + M   +  N    L +   A+  ++    N 
Sbjct: 360 GLAERQVILINRAFQVAEHELKISASVGIAMFPGNGHNPQELLMNADAAMYHAKGMGKNG 419

Query: 380 VQIFPFSFAEKAARDEGVRQMLVRWIKNGKPPIFYQPKFEIHNRRMIGAEALLRAIDTHG 439
              F  S    A +   + Q L   ++  +  ++YQPK +  +   +GAEALLR      
Sbjct: 420 YSFFDASMNTNARKQLQLLQDLRNAVEQEQFRLYYQPKCDAVSGIPVGAEALLRWEHPQQ 479

Query: 440 QALSPYYVLEIAERHRLLVEF-EWSTIEAVVR-DLAELPGLDPDFHLAVNISASSFATAC 497
             L P   +E+AE+  L++   EW   EA  +  L    G + D+ +AVN+SA  F  A 
Sbjct: 480 GLLLPAMFIELAEKTGLIIPIGEWVLNEACRQMSLWYAQGYE-DWRIAVNLSALQFCHAG 538

Query: 498 FADRVVALLQEMTVPAHRLSIEVTEMSRMPTTDSVQQNFDTLIAAGVRLALDDFGTGYAA 557
               V   L+   +PA+ L++E+TE + M   D+       L   GV L++DDFGTGY++
Sbjct: 539 LVKSVADALERHQLPANNLTLEITETTAMSDADASMTVLQQLSDMGVDLSIDDFGTGYSS 598

Query: 558 LTLLARFPFEEVKIDQWMTSRLDQARFRDAVVLAFES-AERYGAKLVTEGIETEEQCRIL 616
           L  L R P  E+KID+     L+      A+V A  +  +  G ++V EG+ET+ Q   L
Sbjct: 599 LMYLKRLPANELKIDRGFVRDLEHDSDDAAIVSAIVALGQALGLRIVAEGVETDVQQSFL 658

Query: 617 MQMGIRFGQGYLYSPAVPLD 636
            ++G    QGYL    +P +
Sbjct: 659 TRLGCNSLQGYLLGHPLPAE 678