Pairwise Alignments

Query, 645 a.a., GGDEF family protein from Agrobacterium fabrum C58

Subject, 1194 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas sp. S08-1

 Score =  140 bits (353), Expect = 3e-37
 Identities = 118/441 (26%), Positives = 197/441 (44%), Gaps = 17/441 (3%)

Query: 202  LLRSEARAREAVKKREVAARTDSLTGLPNRRALKDHIEMTTRQAP--AVPHALLLIEIVN 259
            +L     ++   ++ E  A  DSLTGLPNR  L D I      A   +    L  ++I  
Sbjct: 601  ILHDVTESKRYQEELEHQANHDSLTGLPNRNLLNDRIGQAIAFASRGSGQFTLAFMDIDQ 660

Query: 260  IADVAAYQGDDWADLFWPKLAREICDGENGLLSKFNDPRSFMFGDATLAVVIEGVSLEKS 319
               V    G    D    ++A  +      +     D  + + GD  + ++ +   L  S
Sbjct: 661  FKVVNDSLGHSSGDQLLIEIAARLRASVRDI-----DTVARLGGDEFIILLADTDQL--S 713

Query: 320  ESAGLVLHLHEGLIAFFRSAEAGPVPHLKIGAANLEMVSHQNVASFLRHLSLALRRSE-- 377
            E   L+  + + + +              IG         ++  + LR+   A+ +++  
Sbjct: 714  EQLALLEQIKDSIASPMMLDGQEVAVSCSIGFCCFPS-DGRDAGTLLRNADTAMYQAKHQ 772

Query: 378  --NPVQIFPFSFAEKAARDEGVRQMLVRWIKNGKPPIFYQPKFEIHNRRMIGAEALLRAI 435
              N +  F  +  E+      + Q     ++N +  +FYQP+ ++ N R+ G EAL+R  
Sbjct: 773  GRNRICAFMPAMNEQVQARLAMEQQTRHALQNQEFIVFYQPQLDLQNGRLCGFEALVRW- 831

Query: 436  DTHGQALSPYYVLEIAERHRLLVEFEWSTIEAVVRDLAEL-PGLDPDFHLAVNISASSFA 494
            +  G  +SP   + +AE    +V+ ++   E V + LA        D  +AVN SA SFA
Sbjct: 832  NRGGTMVSPGEFIPLAEETGWIVDIDFYVFEMVCKQLAIWRESFSQDLSVAVNFSAISFA 891

Query: 495  TACFADRVVALLQEMTVPAHRLSIEVTEMSRMPTTDSVQQNFDTLIAAGVRLALDDFGTG 554
               F +R++++L+   +P+  + IE+TE       D VQ+    L   GVR ++DDFGTG
Sbjct: 892  DENFIERILSVLRSQNIPSRWIKIELTETILTSDADVVQRKMQHLCEQGVRFSIDDFGTG 951

Query: 555  YAALTLLARFPFEEVKIDQ-WMTSRLDQARFRDAVVLAFESAERYGAKLVTEGIETEEQC 613
            Y++L  L RFPF ++KID+ ++T  L +                 G K++ EG+E  EQ 
Sbjct: 952  YSSLGYLKRFPFSQLKIDRSFITDILTEPDSASLARSMISIGHNLGIKVIAEGVEQSEQM 1011

Query: 614  RILMQMGIRFGQGYLYSPAVP 634
              L   G    QGY YSP +P
Sbjct: 1012 SFLRAAGCDEMQGYFYSPPLP 1032