Pairwise Alignments

Query, 347 a.a., ABC transporter, substrate binding protein from Agrobacterium fabrum C58

Subject, 342 a.a., Hydroxymethylpyrimidine ABC transporter, substrate-binding component from Variovorax sp. SCN45

 Score = 71.2 bits (173), Expect = 4e-17
 Identities = 80/325 (24%), Positives = 134/325 (41%), Gaps = 31/325 (9%)

Query: 27  ATGAYAETPVKFTLDWKFEGPAAGFLLALDKGYFKAEGLDVTIDSGNGSVEAIPRVATGA 86
           A  A A+  V F  +WK +    GF  AL  G +K  GLDV I  G   V   P +  G 
Sbjct: 21  AFAAQAQEKVVFATNWKAQAGHGGFYQALVDGTYKKYGLDVDIQQGGPMVNNRPMLPAGK 80

Query: 87  --YQMGFGDINSVMKFLDEDPSQKIKAVYMVYERPTFAVVGR---KSLGVTGDPKSLEGK 141
             + M    + S     +  P+  + A +    +  FA  G+       +T  P +  GK
Sbjct: 81  VDFLMTGNLLQSFDNVKNGVPTVVVAAFFQKDPQAMFAHPGQGFDTFKDMTKAPVAFIGK 140

Query: 142 KLGAPPPDGAFAQWPAFKQVAGLDDSKIKIESIGFPVREPMLAKGDVDAVFGFAFSVILN 201
                  DG F+ W   K   G  DS++K     F V   +  K  +    G+A S  L+
Sbjct: 141 -------DGQFSFWQWMKSEHGFKDSQLK--PYTFNVGPFLADKKSIQQ--GYAISEPLS 189

Query: 202 LKKQGIADDDISTILMAEHGLNLYGNAVLVNTDFAEKNPEAVKGFLKALAKGFADSVKTP 261
           +K Q   D  +   L+A++G + Y   +    D  +  PE V+ F++A   G+ + +   
Sbjct: 190 IKAQAGFDPVVQ--LLADNGFSTYATTIETRADLIKNKPETVRKFIEASIIGWNNYLYGD 247

Query: 262 EEGVAAVLKRNE------TLDSAIEL-ERLNMANSMNIKTPYVVENGMGGVDPARLAASL 314
            +    ++ +        TL  +IEL +++ + +S    T      G+G +D AR+    
Sbjct: 248 NKAANELIAKTNPDSPIATLQGSIELMKKMGIVDSGESLT-----KGIGAMDEARVKDFY 302

Query: 315 DTL-KVSMGLKGNVKAEQVFDAAYL 338
           D + K  +   G V   +V    ++
Sbjct: 303 DKMVKAGLYKAGEVDLSKVVTTQFV 327