Pairwise Alignments

Query, 336 a.a., ABC transporter, substrate binding protein from Agrobacterium fabrum C58

Subject, 314 a.a., Carnitine uptake ABC transporter, periplasmic component from Pseudomonas putida KT2440

 Score = 50.8 bits (120), Expect = 4e-11
 Identities = 69/328 (21%), Positives = 127/328 (38%), Gaps = 52/328 (15%)

Query: 4   LLASTILVTGFITAAGAANSANAAETCGNITIAEMNWASAGVAAYVDKFIMENGYDCTVN 63
           L  S+I+ T    A  AA        C N+ +  +NW    +A      ++ +G      
Sbjct: 12  LALSSIVATPLFAAEPAA--------CKNVRLGVVNWTDV-IATSAMAQVLLDGLGYQTK 62

Query: 64  VISGDTTPTFTSMNEKGQPDMAPEMW---VNTLGTPYEEAVKKGNLIQEVKILSEGGVEG 120
             S      F  + +K + DM    W   +    TP+ +A        + K+L +  +E 
Sbjct: 63  QTSASQQIIFAGIRDK-RLDMFLGYWNPIMTQTITPFVDA-------NQFKVLDKPSLED 114

Query: 121 ----WWIPKYLADEHPDIKTVEDALKHPELFPAPEDASKGAVFGCPPGWGCQPTTANLFK 176
                 +PKYL D+   +KT  D  K        E    G ++G  PG G       +  
Sbjct: 115 ARATLAVPKYLYDK--GLKTFADIHKF-------EKELGGKIYGIEPGSGANTQIKAMIT 165

Query: 177 ARKADEKGFALIDTGSAAGLDGSISNAYEKKQGWLGYYWSPTAILGKYDMVKLDDGVALD 236
             + D   F L+++ S AG+  ++  A  +K+  + + W+P  +    DM  L D     
Sbjct: 166 KNQFDLGKFQLVES-SEAGMLAAVDRAVRRKEAVVFFGWAPHPMNVNIDMAYLGD----- 219

Query: 237 REAYDTCIAKPDCADPKPNAYPVAEVFTVVTKDFAEKAGPSIDYIRKRQWDNATVAGVLA 296
                      D   P       A V+TV   D+AE+   ++  +   ++     + ++ 
Sbjct: 220 ---------SQDALGPDEGR---ATVWTVTAPDYAERCPNALRLLANLKFSAEDESRMMQ 267

Query: 297 WMDDNQGTNEDGAEYFLENHEDIWTKWV 324
            + D++   E  A  +L++H +   +W+
Sbjct: 268 PLLDHKDALE-SARQWLKDHPEDKARWL 294