Pairwise Alignments

Query, 785 a.a., methyl-accepting chemotaxis protein from Agrobacterium fabrum C58

Subject, 562 a.a., HAMP domain-containing protein from Dickeya dianthicola ME23

 Score =  223 bits (567), Expect = 3e-62
 Identities = 134/342 (39%), Positives = 198/342 (57%), Gaps = 9/342 (2%)

Query: 444 RLASGDMVCEIATPFAPQFEALRHDFNSSVHQLREALTSVGQSVQTVNGGAHEVSSASDD 503
           R++ GD+  +I++    +   L    +     L + +  V    + ++  A ++++ + D
Sbjct: 230 RVSRGDLTTQISSSRKDEAGLLLQALDHMNASLCQIVGQVRDGAEAISTAASQIAAGNQD 289

Query: 504 LSRRTEQQAASLEETAAALEEITANVSATSKRAGEARDTVREARTKADLSGKVVRDAVAA 563
           LS RTE+QA+SLE+TAA++EE+ + +  T++   +A     +A + A  SG+V+      
Sbjct: 290 LSSRTEEQASSLEQTAASMEELVSTIKNTAENTQQATSIANQASSAAHRSGEVMLSVTNK 349

Query: 564 MERIEHSSRQIGQIIGVIDEIAFQTNLLALNAGVEAARAGDAGKGFAVVAQEVRELAQRS 623
           M  I  +S ++ +IIGVID IAFQTN+LALNA VEAARAG+ G+GFAVVA EVR LAQRS
Sbjct: 350 MRGIREASMRMAEIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRS 409

Query: 624 ANAAKEIKQLINTSAVAVGEGVKLVADTGVGLSEIEQLVLSVNSHMDAIATAAQEQSAGL 683
           A AAKEIK+LI+ S   + EG++LV      +  +   V  V+S ++ I+ A+ EQS G+
Sbjct: 410 ATAAKEIKELIDDSVDKIQEGMQLVDTAESTMDGLTGHVKDVHSIINEISQASHEQSDGI 469

Query: 684 SEVNTAVNHMDQATQQNAAMVEEMNAAGAGLAQECANLQALLAQFQLGQQASALRETARH 743
           S++N AV  +D  TQQNAA+VEE  +A   L  + + L   ++ F+L  Q S        
Sbjct: 470 SQINLAVGQIDTTTQQNAALVEESASAALSLQSQASLLAEAVSAFRLTPQGS-------- 521

Query: 744 MQRVANPSRAPAAPVAAPPRARPVATRGNAALAVKGDDWTEF 785
                +P R PAA   A    RP  T   AA A   DDWT F
Sbjct: 522 -NGAPSPVRQPAALSHARLAVRPGVTEKRAAAAGTHDDWTSF 562



 Score = 40.4 bits (93), Expect = 3e-07
 Identities = 103/532 (19%), Positives = 195/532 (36%), Gaps = 73/532 (13%)

Query: 83  VAAARQKVDAAMTAFLTQSSSLEDARLQGPLKRVKDVYAQFVELRKKVDANVSQPLDRRE 142
           +A   +++   M A   Q++   D R Q  +  ++ + AQF+E  +KV A V      R+
Sbjct: 88  IAPVSKEITRLMAALEKQANESRDVRNQQLIGDIRRIRAQFLESGQKVVALVK--ASNRD 145

Query: 143 GGLDKTVMTLGGDFLASLEAGSTALEGAVRSLDQGQTGLIQLRSYGWSARALGGSATVVL 202
             L+        +F   L+        AVR L   Q   +                TV  
Sbjct: 146 EALN--------EFNQRLDPAQREYRNAVRQLVDYQDNAMM--------------GTVDA 183

Query: 203 NAAVAQNRPLTAQEMQQLGAFDAGAAFAWKATGDLVAHESTPQSLKDIYATADKTYFKGD 262
            +A   +  L    +  +G         W A   +    S  Q ++     AD+   +GD
Sbjct: 184 MSATYHDIRLVLLAILAIGV----VLSVWVA---MAITRSVTQPIQQALVMADRV-SRGD 235

Query: 263 FNTQRTKLIEDLNNGRTPTFTLDSWRTTVTENLGTI----AKIASAAMDVLDANAE-KAK 317
             TQ +   +D          LD    ++ + +G +      I++AA  +   N +  ++
Sbjct: 236 LTTQISSSRKD--EAGLLLQALDHMNASLCQIVGQVRDGAEAISTAASQIAAGNQDLSSR 293

Query: 318 QDAFIGSVVYLAVFIATLALCIVSLAVIVGRVTRPISRLTNAMMALSGGNLAIDIAGAKR 377
            +    S+   A  +  L   I + A    + T   ++ ++A  A   G + + +    R
Sbjct: 294 TEEQASSLEQTAASMEELVSTIKNTAENTQQATSIANQASSA--AHRSGEVMLSVTNKMR 351

Query: 378 GDEIGEMARAVEVFREAAIRNRQLEADAVANREQAERDRIELQQRAEAEAEERLNQATGS 437
           G             REA++  R  E   V +    + + + L    EA       +    
Sbjct: 352 G------------IREASM--RMAEIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAV 397

Query: 438 LAGGLRRLASGDMVCEIATPFAPQFEALRHDFNSSVHQLREALTSVGQSVQTVN---GGA 494
           +AG +R LA            A   + ++   + SV +++E +  V  +  T++   G  
Sbjct: 398 VAGEVRSLAQRS---------ATAAKEIKELIDDSVDKIQEGMQLVDTAESTMDGLTGHV 448

Query: 495 HEVSSASDDLSRRTEQQAASLEETAAALEEITANVSATSKRAGEARDTVREARTKADLSG 554
            +V S  +++S+ + +Q+  + +   A+ +I       +    E+       +++A L  
Sbjct: 449 KDVHSIINEISQASHEQSDGISQINLAVGQIDTTTQQNAALVEESASAALSLQSQASL-- 506

Query: 555 KVVRDAVAAMERIEHSSRQIGQIIGVIDEIAFQTNLLALNAGVEAARAGDAG 606
             + +AV+A       S   G    V    A     LA+  GV   RA  AG
Sbjct: 507 --LAEAVSAFRLTPQGSN--GAPSPVRQPAALSHARLAVRPGVTEKRAAAAG 554