Pairwise Alignments

Query, 453 a.a., ABC transporter, nucleotide binding/ATPase protein from Agrobacterium fabrum C58

Subject, 642 a.a., DNA-binding ATPase involved in replication from Pseudomonas putida KT2440

 Score =  164 bits (416), Expect = 6e-45
 Identities = 132/406 (32%), Positives = 197/406 (48%), Gaps = 41/406 (10%)

Query: 48  DSWRADIIFDVMLVPEPF-RERRLKELSGGWQRLAMLARAWITEPDVLLLDEPTNHLDLE 106
           D WR   + +  L       ++ L ELSGGW+R  +LA+A ++EPD+LLLDEPTNHLD+ 
Sbjct: 128 DGWRLQQVVESTLSRLQLPADKTLAELSGGWRRRVLLAQALVSEPDLLLLDEPTNHLDIG 187

Query: 107 KINVLESWLGELPR--DTAVIIVSHDRAFLDNVTRTTLFLRPENSALFRLSYG----HAR 160
            I    +WL E  R  + AV+ ++HDR+FL N+    L L       +   Y     H  
Sbjct: 188 AI----AWLEEALRGFNGAVLFITHDRSFLQNLATRILELDRGGLIDWNGDYASFLVHKE 243

Query: 161 AALEEEDAA----DERRFQRDMKTAQQLRRQAAKLNNIGINSGSDLLTIKTKQLRQRAEK 216
           AAL  E+ A    D+R  Q ++   Q ++  A +  N G       L ++  + R+R  K
Sbjct: 244 AALAAEETANALFDKRLAQEEVWIRQGIK--ARRTRNEGRVRALKALRVERGERRERQGK 301

Query: 217 IEEKARPAHSDRSAGKIQLANRGTHAKVLMTLEDVPVSTPDGTLLFRTGRQFIRQGDRIV 276
                           IQ+       K +M LE+V     DG LL +     +++ DRI 
Sbjct: 302 --------------ANIQIEAADKSGKQVMVLENVSFHHADGPLLVKDFSMVLQRQDRIG 347

Query: 277 ILGRNGVGKTRLMSLLQAAV-TAAGQIEDGIKATPSLVAGYVDQSLAEIDDDSTPAALLS 335
           +LG NG GKT L+ ++   +   AG++E G K    L   Y DQ   ++D + T    L+
Sbjct: 348 LLGANGTGKTTLLKMMLGDLEPTAGKVERGTK----LEVAYFDQMRHQLDLEKTVIDNLA 403

Query: 336 RRFD---IGDQRIHGLLAGAGIDMEMQKRR--IATLSGGQKARLAMLALRLAEPNFYLLD 390
              D   I  Q  H L          Q+ R  +  LSGG++ARL +  L     N  +LD
Sbjct: 404 EGRDFIEIDGQNRHVLSYLGDFLFSPQRARTPVKALSGGERARLLLAKLFSKPANLLVLD 463

Query: 391 EPTNHLDIDGQETLEAEIISREASCMLVSHDRSFVRTVGTRFWLIE 436
           EPTN LD++  E LE  + + + + ++VSHDR+F+  V T   + E
Sbjct: 464 EPTNDLDVETLELLEEVLSNYKGTVLMVSHDRAFLDNVVTSTLVFE 509



 Score = 77.0 bits (188), Expect = 2e-18
 Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 40/241 (16%)

Query: 245 LMTLEDVPVSTPDGTLLFRTGRQFIRQGDRIVILGRNGVGKTRLMSLLQAAVTAAGQIED 304
           L+   DV ++     LL +   Q  R G+R+ I+GRNG GK+ ++ L++         +D
Sbjct: 3   LLKFSDVSLAFGAMPLLDKVSWQIAR-GERVCIIGRNGTGKSSMLRLVKGEQKG----DD 57

Query: 305 G-IKATPSLVAGYVDQSLAEIDDDSTPAALLSRRFDIGD--QRIHGLLAGAGIDMEMQK- 360
           G I   P L  G + Q L   D+ +    + +    +G+   + H L      D +++K 
Sbjct: 58  GEIWRAPGLKIGELPQELPVADERTVFDVVAAGLDGVGELLAQFHHLSMNIQGDEDLEKL 117

Query: 361 -------------------------------RRIATLSGGQKARLAMLALRLAEPNFYLL 389
                                          + +A LSGG + R+ +    ++EP+  LL
Sbjct: 118 MHVQHELEARDGWRLQQVVESTLSRLQLPADKTLAELSGGWRRRVLLAQALVSEPDLLLL 177

Query: 390 DEPTNHLDIDGQETLEAEIISREASCMLVSHDRSFVRTVGTRFWLIEKRKLVEVDNPEAF 449
           DEPTNHLDI     LE  +     + + ++HDRSF++ + TR   +++  L++ +   A 
Sbjct: 178 DEPTNHLDIGAIAWLEEALRGFNGAVLFITHDRSFLQNLATRILELDRGGLIDWNGDYAS 237

Query: 450 F 450
           F
Sbjct: 238 F 238



 Score = 65.9 bits (159), Expect = 4e-15
 Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 1   MEPSSGDITRLRGLTQSIVHQNLPFALMDHTMRDAVLSALPADTIDSD-----SWRADII 55
           +EP++G + R   L  +   Q      ++ T+ D +        ID       S+  D +
Sbjct: 367 LEPTAGKVERGTKLEVAYFDQMRHQLDLEKTVIDNLAEGRDFIEIDGQNRHVLSYLGDFL 426

Query: 56  FDVMLVPEPFRERRLKELSGGWQRLAMLARAWITEPDVLLLDEPTNHLDLEKINVLESWL 115
           F       P     +K LSGG +   +LA+ +    ++L+LDEPTN LD+E + +LE  L
Sbjct: 427 FSPQRARTP-----VKALSGGERARLLLAKLFSKPANLLVLDEPTNDLDVETLELLEEVL 481

Query: 116 GELPRDTAVIIVSHDRAFLDNVTRTTLFLRPE 147
                   V++VSHDRAFLDNV  +TL    E
Sbjct: 482 SNYKG--TVLMVSHDRAFLDNVVTSTLVFEGE 511