Pairwise Alignments

Query, 541 a.a., ATP-dependent DNA ligase from Agrobacterium fabrum C58

Subject, 866 a.a., ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score = 47.8 bits (112), Expect = 2e-09
 Identities = 68/259 (26%), Positives = 110/259 (42%), Gaps = 39/259 (15%)

Query: 217 LDALDPADYAAEWKWDGIRVQLSRAGETRKLYSRSGDDISGAFPDVLDAIE----FEGVM 272
           ++A    D+  E K+DG R+     G+  +L++R+G D +   P+++ A++     +   
Sbjct: 245 VEAPPAGDWLYEIKFDGYRMLTRIQGDDVRLFTRNGHDWTERLPELVKALKGMKLRDSWF 304

Query: 273 DGELLVGGTARSNNLTRTFSDLQQRLNRKTVTAKMRDDYPAFIRAYDLLFEGESDIRAQT 332
           DGE++V            F  LQ   +     A    D   ++  +D+ F    D+R   
Sbjct: 305 DGEVVV----LDEQGLPDFQGLQNAFD-----AGNSKDILYYL--FDMPFLSAEDLREVP 353

Query: 333 YLERRNRLSDIIERAPHDRFDLSPLIGFSSWSELDTLRAAPPDPV-------IEGVMIKR 385
             +RR+ L  +++         S L+ +S     D  +A   D V       +EGV+ KR
Sbjct: 354 LEQRRDALKQVLDA------QKSRLLRYS-----DAFQAGHQDIVASAAAMGLEGVIGKR 402

Query: 386 RDSTYQAGRAKGPWFKWKRDPYNIDAVMMYAQRGHGKRSSYYSDFTFGVWAEGEDGEQLV 445
             S Y + R    W K K        V+ Y     G RS+ +      V A GEDG  L+
Sbjct: 403 AGSAYVSKR-NADWIKLKCRLRQEFVVVGYT-APQGSRSA-FGALLLAVNA-GEDG--LI 456

Query: 446 PVGKAYFGFTDAELEVLDK 464
             G+   GFT+  LE L K
Sbjct: 457 YAGRVGTGFTEVSLEQLHK 475