Pairwise Alignments

Query, 541 a.a., ATP-dependent DNA ligase from Agrobacterium fabrum C58

Subject, 869 a.a., DNA ligase D from Ralstonia solanacearum PSI07

 Score = 54.3 bits (129), Expect = 2e-11
 Identities = 84/294 (28%), Positives = 119/294 (40%), Gaps = 51/294 (17%)

Query: 195 PLLATPAIFHSVMLATPVADGDLDALDPADYAAEWKWDGIRVQLSRAGETRKLYSRSGDD 254
           PL AT     + ++ TP A G  D         E K+DG R+     G++ +L+SR+G D
Sbjct: 224 PLPATLEPQLATLVGTPPASGTWDY--------EAKFDGYRILARIDGDSVQLFSRNGRD 275

Query: 255 ISGAFPDVLDAIEFEGV----MDGELLVGGTARSNNLTRTFSDLQQRLNRKTVTAKMRDD 310
            +   P    A+   G+    +DGE +V          +   D Q   N        R  
Sbjct: 276 WTARLPRQARALPALGLRSAWLDGEAVVVN-------EQGVPDFQALQNAFETAHMERIR 328

Query: 311 YPAFIRAYDLLFEGESDIRAQTYLERRNRLSDIIERAPH--DRFDLSPLIGFSSWSELDT 368
           Y  F    DL +    D+R     ERR  L  I+E AP   DR      I +S  + LD 
Sbjct: 329 YVLF----DLPYCNGVDLRGVPLRERRALLERIVEAAPGALDR----EAIAYS--ARLD- 377

Query: 369 LRAAPPDPVI--------EGVMIKRRDSTYQAGRAKGP-WFKWKRDPYNIDAVMMYAQRG 419
              APP  ++        EG++ KR D+ Y++GR  GP W K K        +  Y+   
Sbjct: 378 ---APPSQLLASACGMSMEGIIGKRADAPYRSGR--GPTWIKLKCGQRQAFVIGGYS-AP 431

Query: 420 HGKRSSYYSDFTFGVWAEGEDGEQLVPVGKAYFGFTDAELEVLDKFVRDNTVER 473
            G RS  +     GV+A   D   L   G+   GF  A L  L   +R    +R
Sbjct: 432 KGSRSG-FGALLLGVYA---DDGALRYAGRVGTGFNQASLRALHAELRGLHTDR 481