Pairwise Alignments

Query, 541 a.a., ATP-dependent DNA ligase from Agrobacterium fabrum C58

Subject, 552 a.a., putative DNA ligase, ATP-dependent from Pseudomonas putida KT2440

 Score =  321 bits (823), Expect = 4e-92
 Identities = 216/559 (38%), Positives = 301/559 (53%), Gaps = 31/559 (5%)

Query: 1   MKAFATLLDRLVLTPSRNGKLKLLTDYFRDTPDPDRGYGLAAIAGTLDLKSVKPAMLREL 60
           MKAFATL  RL  T S N KL+ L DYF   P  D  + +  +AG    + V   +LREL
Sbjct: 1   MKAFATLFLRLDATTSSNAKLEALRDYFDMAPAEDAAWAVYFLAGGRPRQLVPTRLLREL 60

Query: 61  V--MERMDEVLFRYSYDYVGDLAETISLVWGNIGGVDDAEAQDPRLGEVVTLMNSLGRTE 118
              +  + + LF  SY  VGDLAETISL+   +    + E     + + +  +  L   +
Sbjct: 61  ATTLAGLPDWLFEESYQAVGDLAETISLLLP-LHADGNEEGLATWVEQHLLPLRGLTPEQ 119

Query: 119 VRGAVRDLLDRLDTSSRFAFLKLATGSLRIGVSARLARQALADFADKDITEIETLWHGLT 178
           VR  +  L  RLD +S    LKL TGS R+GVS  L  +ALA  A  D   +     G T
Sbjct: 120 VRQRLPPLWARLDRASLMLCLKLITGSFRVGVSKLLVTRALAQLAGLDAKRVAQRLVGYT 179

Query: 179 P--------PYTTLFSWLEGNSDRPLLATPAIFHSVMLATP--VADGDLDAL--DPADYA 226
                     Y  L +    +        P  F    LA P  V+    D L   P+D+ 
Sbjct: 180 DIGHRPTAASYQRLIAPESADEHNQRGGQPYPF---FLAHPLQVSSDQFDTLLGPPSDWQ 236

Query: 227 AEWKWDGIRVQLSRAGETRKLYSRSGDDISGAFPDV---LDAIEFEGVMDGELLVG--GT 281
            EWKWDGIR Q+ +      ++SR  + ++  FP++      +    V+DGE+LV   G 
Sbjct: 237 IEWKWDGIRAQVVKRDGQLWVWSRGEELVTERFPELHGLAQTLPDGVVLDGEILVWKPGE 296

Query: 282 ARSNNLTRTFSDLQQRLNRKTVTAKMRDDYPAFIRAYDLLFEGESDIRAQTYLERRNRLS 341
             +    + F+ LQQR+ RKT+  K+ +D P  ++AYDLL     D R++   ERR++L 
Sbjct: 297 TETELAVQPFALLQQRIGRKTLGKKLLNDAPVVLQAYDLLEWQGEDWRSRPQHERRSQLE 356

Query: 342 DIIERAPHDRFDLSPLIGFSSWSELDTLRAAPPDPVIEGVMIKRRDSTYQAGRAK--GPW 399
            +++  P     LSPL+    W++L   R       +EG+M+K+R++ Y  GR K  G W
Sbjct: 357 HLVDEHPLAPVLLSPLLQGPDWADLARQREQSRSLGVEGLMLKQREALYGVGRTKDMGIW 416

Query: 400 FKWKRDPYNIDAVMMYAQRGHGKRSSYYSDFTFGVW--AEGEDGEQLVPVGKAYFGFTDA 457
           +KWK DP+++DAV++YAQRGHG+R+S YSD+TF VW    G  G  LVP  KAY G +D 
Sbjct: 417 WKWKIDPFSVDAVLIYAQRGHGRRASLYSDYTFAVWDAPAGTPGRALVPFAKAYSGLSDE 476

Query: 458 ELEVLDKFVRDNTVERFGPVRAVRATPDFGFVLEVAFEGINRSTRHKSGVAMRFPRIARL 517
           E+  +D  +R  TVE FGPVR+V  T     V E+ FEGI  S RHKSG+A+RFPR+ R 
Sbjct: 477 EMRKVDAIIRKTTVETFGPVRSVTPT----LVFELGFEGIALSRRHKSGIAVRFPRMLRW 532

Query: 518 RADKLPAEADRLSTLVAMI 536
           R DK   EAD L+TL A++
Sbjct: 533 RLDKPVEEADDLATLQALL 551