Pairwise Alignments

Query, 541 a.a., ATP-dependent DNA ligase from Agrobacterium fabrum C58

Subject, 544 a.a., ATP-dependent DNA ligase from Pseudomonas fluorescens SBW25

 Score =  313 bits (803), Expect = 8e-90
 Identities = 209/547 (38%), Positives = 287/547 (52%), Gaps = 23/547 (4%)

Query: 1   MKAFATLLDRLVLTPSRNGKLKLLTDYFRDTPDPDRGYGLAAIAGTLDLKSVKPAMLREL 60
           MKAFA L   L  T S N KL  L  YFR     D  + +  ++G    + V   +LR++
Sbjct: 1   MKAFAELYANLDATTSSNAKLAALQAYFRHAAPEDAAWAVYFLSGGRPRQLVPTRLLRDM 60

Query: 61  VMER--MDEVLFRYSYDYVGDLAETISLVWGNIGGVDDAEAQDPRLGEVVTLMNSLGRTE 118
             E   ++  LF  SY  VGDLAETISL+        + +     L E +  +  L   +
Sbjct: 61  ATEASGIEPWLFEESYQSVGDLAETISLLLPESPYTSE-DGLAVWLEEKLLPLRGLPPLD 119

Query: 119 VRGAVRDLLDRLDTSSRFAFLKLATGSLRIGVSARLARQALADFADKDITEIETLWHGLT 178
           +   +  L  +LD  S    +KL TGS R+GVS  L  +ALA  A+ D   +     G T
Sbjct: 120 LAARLPALWAQLDQPSLMVCIKLITGSFRVGVSKLLVTRALAAMAELDSKRVAQRLVGYT 179

Query: 179 P--------PYTTLFSWLEGNSDRPLLATP-AIFHSVMLATPVADGDLDALDPADYAAEW 229
                     Y  L +    +        P   F +  LA PV   D     PAD+  EW
Sbjct: 180 DLSNRPTPEGYLKLIAPESSDEHAQRGGQPYPFFLAHGLAQPVEQFDTLLGSPADWQVEW 239

Query: 230 KWDGIRVQLSRAGETRKLYSRSGDDISGAFPDVLDAIEFEGVMDGELLVGGTARSNNLTR 289
           KWDGIR QL +      ++SR  + ++  FP++   +   G+ DG ++ G      +  +
Sbjct: 240 KWDGIRAQLVKRDGRLWIWSRGEELVTERFPELHSLVS--GLPDGTVIDGEIVVWKDAVQ 297

Query: 290 TFSDLQQRLNRKTVTAKMRDDYPAFIRAYDLLFEGESDIRAQTYLERRNRLSDIIERAPH 349
            F+ LQQR+ RKT++ K+ +D P  + AYDLL     D R  T  ERR +L  +I     
Sbjct: 298 PFAQLQQRIGRKTLSKKVLEDAPVAVLAYDLLEHQGDDWRNHTQAERRAQLEQVIAGCNQ 357

Query: 350 DRFDLSPLIGFSSWSELDTLRAAPPDPVIEGVMIKRRDSTYQAGRAK--GPWFKWKRDPY 407
                SPL+  +SW +L   R A     +EG+M+K RD  Y  GR K  G W+KWK DP+
Sbjct: 358 PVLLASPLLTANSWQDLAEQREASRSLGVEGMMLKARDGLYGVGRTKDMGVWWKWKVDPF 417

Query: 408 NIDAVMMYAQRGHGKRSSYYSDFTFGVWAEGEDGEQ--LVPVGKAYFGFTDAELEVLDKF 465
           ++DAV++YAQRGHG+R+S YSD+TF VW +G  G +  LVP  KAY G TD E+  +D  
Sbjct: 418 SVDAVLIYAQRGHGRRASLYSDYTFAVW-DGPSGSERTLVPFAKAYSGLTDEEMRKVDAI 476

Query: 466 VRDNTVERFGPVRAVRATPDFGFVLEVAFEGINRSTRHKSGVAMRFPRIARLRADKLPAE 525
           VR  TVE+FGPV +V  TP    V E+ FEGI  S RHKSG+A+RFPR+ R R DK   +
Sbjct: 477 VRKTTVEKFGPVSSV--TP--SMVFELGFEGIALSKRHKSGIAVRFPRMLRWRQDKSVED 532

Query: 526 ADRLSTL 532
           AD L+TL
Sbjct: 533 ADNLATL 539