Pairwise Alignments

Query, 331 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 341 a.a., putative exonuclease, DNA ligase-associated from Pseudomonas sp. S08-1

 Score =  247 bits (631), Expect = 3e-70
 Identities = 145/329 (44%), Positives = 192/329 (58%), Gaps = 11/329 (3%)

Query: 6   PKGLYCPAGDFYIDPVRPVARALITHGHSDHARAGHGAVLATRQTLDIMRIRYGEDFCGS 65
           P+GLYCP GDFYIDP RPV RA+ITHGH DHAR G    LA      I+R R G D   +
Sbjct: 8   PEGLYCPPGDFYIDPWRPVERAVITHGHGDHARGGSRHYLAAAPGAGILRTRLGGDI--N 65

Query: 66  EQAVGFGETVEVNGVIVGFHPAGHVLGSAQISVEMNGLRIVASGDYKRGIDPTCAPFETV 125
            Q + +GE ++ +GV +  HPAGHVLGSAQ+ +E  G   VASGDYK   D TC PFE V
Sbjct: 66  LQTLDYGERLDHHGVTLSLHPAGHVLGSAQVRLEHRGEVWVASGDYKVEPDGTCTPFEPV 125

Query: 126 PCDVFITEATFGLPVFHHPLPRVEIGKLLTSI---KQFPDRTHLVGAYSLGKAQRVIRLL 182
            C  FITE+TFGLP++    P+ +I   + +     Q   R  ++  Y+ GKAQR++  +
Sbjct: 126 RCHTFITESTFGLPIYRWQ-PQAQIFAGIDAWWRQNQAAGRASVLFCYAFGKAQRILHGI 184

Query: 183 RDNGYADPIYIHGALARLCDYYVSQGIDLGD-LRPATLEKSNPAAFKGAIVVGPPSAFQE 241
             +    PI  HG++  L   Y   G+ L   L     +KS+P   + A+++ PPSA   
Sbjct: 185 --DASIGPILGHGSMEPLNQVYRDAGVHLPPTLYAGDFKKSDPL-LRQALILAPPSAGGS 241

Query: 242 RWARRFNEPLIAFASGWMMVRQRAKQGGVELPLVISDHCDWPELLETITEIGPQAVWVTH 301
            W RRF +   AFASGWMM+R   ++ GV+   V+SDH DWP LL  I + G + V+VTH
Sbjct: 242 TWMRRFGDYSDAFASGWMMLRGTRRRRGVDRGFVLSDHADWPGLLWAIEQTGAERVFVTH 301

Query: 302 GREEALVRWCELQGIAAKPLHL-VGYEDE 329
           G    LVR+   QG+ A+      G EDE
Sbjct: 302 GSVSVLVRYLREQGLDAQGFDTEYGDEDE 330