Pairwise Alignments

Query, 971 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

 Score =  297 bits (760), Expect = 3e-84
 Identities = 178/498 (35%), Positives = 281/498 (56%), Gaps = 16/498 (3%)

Query: 464  DDRDRFKATLDVLLDHRKGRLNH-EFRIRAEDGHFHWLQIRARPVLGSNGEIIRCVGTIT 522
            DD+ R     ++     +GR++H E   R + G    +++   P+  +  E+   + T  
Sbjct: 591  DDKQRSALLAEL---RERGRVHHREMLGRNKRGDILTVEVSVEPI--TLNEVDCLLLTAR 645

Query: 523  DITEQKNSVERLLQDAMNDNLTGLPNRQVFLDRLQSILNLSPDSEGVRPTVMAIDIDRYK 582
            D+++ KN+  ++   A +D LT LPNR + +DRL   + L      +R  ++ +D+D +K
Sbjct: 646  DVSQLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLK-RHNLRGALLFLDLDHFK 704

Query: 583  LVNDTLGIAAGDNILIALTRRLRRLLKPQDTLARLGGDEFGLILTS-----ERDPQRVAD 637
             +ND+LG   GD +L  +T RL   ++ +DT+ARLGGDEF ++L+      E   ++V +
Sbjct: 705  HINDSLGHPVGDTVLKIITARLEASVRLEDTVARLGGDEFVVLLSGLEGSREHVEEKVRE 764

Query: 638  FADAVNKAIMVPINFANREIILTASIGLVSWIDQQESAAGLLSDAELAMYRAKRAGGNRV 697
             AD + + +  P++   + + +T SIG+    D   + A LL  A++A+YRAK +G N  
Sbjct: 765  LADTLRELLAEPMSLDGQRLQVTPSIGVALIPDHGTTPADLLKRADIALYRAKDSGRNTT 824

Query: 698  EPFRPAFRTSGTDRLQMESDLRRAIERKELSLAYQPIVKLDDGALAGFEALMRWEHPKRG 757
            + F    + + ++RL+ME+DLR A+ R EL+L +QP V   D  + G E L+RW HP+ G
Sbjct: 825  QLFHTTMQKAASERLRMENDLRLALARGELALHFQPQVDARDNRIVGAEVLLRWHHPQLG 884

Query: 758  NIPPSEFIPIAEASGLIEPLGMFALERA--ATDLMDWQHAIDKMPIFISVNISSAQLLNN 815
              PPS+FI + E SGLI  +G + L+ A  A   M     ID     + VNIS  Q   N
Sbjct: 885  QQPPSQFIQVLEESGLILEVGSWILDEACDACARMLTDGLIDADDFNLCVNISPRQFRQN 944

Query: 816  ELYNDVRGMLTRTRCNPQQLKLELTESVVMENPEQARLVLSKLKETGLSLAMDDFGTGYS 875
            +    V   L   R   Q L LE+TE +V++N E     + +LK  G+S AMDDFGTGYS
Sbjct: 945  DFVGRVLRSLDDYRLPRQMLTLEITEGIVIQNLEDTISKMCELKRYGVSFAMDDFGTGYS 1004

Query: 876  SLAYLTRFPFDTIKLDKALVANTSDKRN--VLLRSVIAMARALDMQVVAEGIETPEDAAE 933
            SL YL R P D +K+D++ V +     N   ++R+++AMAR+LD+ V+AEG+E  E  A 
Sbjct: 1005 SLTYLKRLPVDALKIDQSFVRDAPVDPNDAEIVRAIVAMARSLDLAVIAEGVELTEQLAF 1064

Query: 934  LARMNCHFGQSFMFGTPV 951
            L R+ CH  Q ++   P+
Sbjct: 1065 LERLGCHLYQGYLHSRPL 1082



 Score = 51.6 bits (122), Expect = 3e-10
 Identities = 33/133 (24%), Positives = 57/133 (42%)

Query: 402 QQGLFSDLERQSLALTGSGDTVWDWDVTRDRIVTTPDISNRLGLEPGTMHGAARNWLPRL 461
           +Q L    ER  LAL  +    WDW +    +  +   +   GL P   H +   +   +
Sbjct: 275 EQALKDSQERLDLALDSAQLGTWDWHIPSGMLYGSARAAQLHGLPPIPFHESFDAFFEGV 334

Query: 462 HPDDRDRFKATLDVLLDHRKGRLNHEFRIRAEDGHFHWLQIRARPVLGSNGEIIRCVGTI 521
              +R+  +     L +   G     +R++ E+G   +++ RAR      G  +R  GT+
Sbjct: 335 PEHERNSMRQAYRSLREGPAGNYQITYRVQLENGTSRYIESRARLYRDDQGIPLRMAGTL 394

Query: 522 TDITEQKNSVERL 534
            DIT+Q    +RL
Sbjct: 395 LDITDQVEREQRL 407



 Score = 45.4 bits (106), Expect = 2e-08
 Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 1/121 (0%)

Query: 415 ALTGSGDTVWDWDVTRDRIVTTPDISNRLGLEPGTMHGAARNWLPRLHPDDRDRFKATLD 474
           AL G+    W WD+   R+  +       G +P     A  ++L  L  +DR R +    
Sbjct: 35  ALNGAHLGAWLWDIESGRVSWSRGTQALFGFDPQRPLPADIDYLDLLPEEDRARTRQVFQ 94

Query: 475 VLLDHRKGRLNHEFRIRAEDGHFHWLQIRARPVLGSNGEIIRCVGTITDITEQKNSVERL 534
            +++          RIR  DG  HWL+I        +G   + +G I +IT Q+     L
Sbjct: 95  AVVNGEPVEQAMRHRIRWPDGSLHWLEINGSLTHDPHGR-PQMIGVIREITRQRERETAL 153

Query: 535 L 535
           +
Sbjct: 154 I 154