Pairwise Alignments

Query, 569 a.a., cytochrome-c oxidase chain I from Agrobacterium fabrum C58

Subject, 529 a.a., Cytochrome c oxidase subunit 1 from Pseudomonas putida KT2440

 Score =  612 bits (1578), Expect = e-179
 Identities = 301/552 (54%), Positives = 386/552 (69%), Gaps = 29/552 (5%)

Query: 19  DAHAHDDHSHDHSHKPGF-FARWFLSTNHKDIGTLYLIFAIMAGIIGGGLSVVMRMELQE 77
           D HAH    HDH+H P     RW L+TNHKDIGT+YL F+ +  ++GG  ++V+R EL +
Sbjct: 6   DDHAH---GHDHAHGPAKGLMRWVLTTNHKDIGTMYLWFSFIMFLLGGSFAMVIRAELFQ 62

Query: 78  PGIQIFHGLASMVYGFEGDAAIDGGKHMFNVFTTAHALIMIFFMVMPAMIGGFANWMIPI 137
           PG+QI                       FN  TT H LIM+F  VMPA +G  ANWMIP+
Sbjct: 63  PGLQIVEPA------------------FFNQMTTMHGLIMVFGAVMPAFVG-LANWMIPL 103

Query: 138 MIGAPDMAFPRLNNISFWLIVPAFILLLLSLFVEGPAGAYGVGGGWTMYPPLSTSGMPGP 197
           MIGAPDMA PR+NN SFWL+  AF+LL+ +LF   P G  G   GWT Y PLST+  P  
Sbjct: 104 MIGAPDMALPRMNNFSFWLLPAAFLLLVSTLF--SPGG--GPNFGWTFYAPLSTTYAPA- 158

Query: 198 AVDLAIFSLHVAGASSILGAINFITTILNMRAPGMTLHKMPLFAWSVLVTAFLLLLSLPV 257
           +V   IF++H+ G SSI+GAIN I TILN+RAPGMTL KMPLF W+ L+TAFLL+  +PV
Sbjct: 159 SVTFFIFAIHLMGISSIMGAINVIATILNLRAPGMTLMKMPLFVWTWLITAFLLIAVMPV 218

Query: 258 LAGGITMLLTDRNFGTAFFSPEGGGDPILYQHLFWFFGHPEVYILILPGFGIISHIVSTF 317
           LAG +TM+L D +FGT+FFS  GGGDP+L+QH+FWFFGHPEVYI+ILP FG +S I+  F
Sbjct: 219 LAGVVTMMLMDIHFGTSFFSAAGGGDPVLFQHVFWFFGHPEVYIMILPAFGAVSSIIPAF 278

Query: 318 SKKPVFGYLGMAYAMVAIGAVGFIVWAHHMYTVGLSLEAQRYFVFATMVIAVPTGIKIFS 377
           S+KP+FGY  M YA  AI  + FIVWAHHM+ VG+ +  + +F++ATM+IAVPTG+K+F+
Sbjct: 279 SRKPLFGYTSMVYATGAIAFLSFIVWAHHMFVVGIPVVGELFFMYATMLIAVPTGVKVFN 338

Query: 378 WIATMWGGSLTFSTPMVWAIGFIFLFTVGGVTGVQLANAGLDRSLHDTYYVVAHFHYVLS 437
           W++TMW GSLTF TPM++AI F+ LFT+GG +G+ LA A  D   HDTY+VVAHFHYVL 
Sbjct: 339 WVSTMWEGSLTFETPMLFAIAFVILFTIGGFSGLMLAIAPADFQYHDTYFVVAHFHYVLV 398

Query: 438 LGAVFAIFAGWYYWFPKITGYMYNEFIGKLHFWVMFIGVNLIFFPQHFLGLAGMPRRYID 497
            GA+F IFA  YYW PK TG+MY+E +GKLHFW+ F+G+N+ FFP HF+GLAGMPRR  D
Sbjct: 399 PGAIFGIFASAYYWLPKWTGHMYDETLGKLHFWLSFVGMNMAFFPMHFVGLAGMPRRIPD 458

Query: 498 YPDAYAGWNMVSSYGSYISAVAVGIFLFGVWEAFAKKRIAGNNPWGEGATTLEWQLSSPP 557
           Y   +A +NMVSS G+++       FLF V +       A   PW +GA  LEW + SP 
Sbjct: 459 YNLQFADFNMVSSIGAFMFGATQIFFLFIVIKCIRGGAPAPAKPW-DGAEGLEWSIPSPA 517

Query: 558 PYHQWEQLPRIR 569
           PYH ++  P ++
Sbjct: 518 PYHTFQTPPEVK 529