Pairwise Alignments

Query, 416 a.a., RNA methyltransferase from Agrobacterium fabrum C58

Subject, 401 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) from Sphingobium sp. HT1-2

 Score =  193 bits (491), Expect = 7e-54
 Identities = 136/414 (32%), Positives = 199/414 (48%), Gaps = 26/414 (6%)

Query: 8   IKSLGAQGDGIAHCPDGPVYVPFALPGETVAIAKVKDQGTVMSITEASADRRDPVCRHFG 67
           I  + A+GDG+    DG  +   A PG+ +A       G+++    A     D  C HF 
Sbjct: 8   ILRIAAKGDGVT--ADGRHFALVA-PGDRIAA-----DGSII----AGPHHVDAPCVHFP 55

Query: 68  PEGINGTCGGCSLQHLADQPYHAFKRELVVSALRSKGLTPP-VDDLVICRPGERRRAVFA 126
                  CGGC LQ + +     F    V  AL  + + P  V    +  P  RRRA   
Sbjct: 56  G------CGGCELQQIDEPSLADFVSARVTGALAGQAVVPQTVLPAHVSPPRTRRRASLR 109

Query: 127 ARKTEKGLLLGFSQANSHHIVAIEECPVTSPGIVSRFDAIRAIGLSMVANAEPFRITVLE 186
           A +  K + +GF++  SH +V +  C +  P + +    +R + L+ + +     + +  
Sbjct: 110 AARQGKRITIGFAEQGSHVLVDLTMCEILDPRLFALIAPLRTMLLTCLPDKRAAHVRMSL 169

Query: 187 TLSGLDISVEGIKSVNDKQRRTLTETVLAMRGIARVSLSG----EILIEPQKPIIEFGGI 242
           T  G+D+ +EG+K         L +       +AR+++      E   EP+   + FGG+
Sbjct: 170 TDQGVDLLLEGVKVEGLAADEALGDFARG-HALARLTIDQGDGPETRWEPEPATVSFGGV 228

Query: 243 PVSPPAGGFTQATKQAEDAMAELMLAHVGKSKRIADLFCGSGTFALRLARIGRVHAVEAE 302
            V  P   F QAT   E A+ + +   +  +  +ADLFCG GTFAL +     V+A E  
Sbjct: 229 AVGFPPYSFLQATPDGEAALVKAVQDALPATGAVADLFCGLGTFALAIGANRPVYAAEGA 288

Query: 303 DKALKALDFAARNTQGLKPVSVEKRDLFRRPLMTSELKNYDAVVFDPPRAGAEVQCKELA 362
              + +L  A    Q  + +  + RDLFRRPL   EL  + AVV DPPRAGA  Q  +LA
Sbjct: 289 RDLVLSLKLAGHRAQ--RRMVADHRDLFRRPLTPEELNRFAAVVIDPPRAGAREQAMQLA 346

Query: 363 RSTVKKIVAVSCNPLTLARDLAILTEGGYRVTRVTPVDQFLWSPHVEAVAVLEK 416
           +STV  I  VSCNP + ARD A L  GGY +  V PV QF WS HVE V +  +
Sbjct: 347 QSTVPLIAYVSCNPGSFARDAAHLVTGGYVLDSVMPVGQFRWSTHVELVGIFRR 400