Pairwise Alignments

Query, 416 a.a., RNA methyltransferase from Agrobacterium fabrum C58

Subject, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

 Score =  143 bits (361), Expect = 9e-39
 Identities = 135/435 (31%), Positives = 201/435 (46%), Gaps = 36/435 (8%)

Query: 4   QTVTIKSLGAQGDGIAHCPDGPVYVPFALPGETVAIAKVKDQGTVMS-----ITEASADR 58
           Q + I+ L   G GIA       +V  AL GE V    +  +G V+      + +A+ +R
Sbjct: 29  QRLDIERLAGDGRGIAFLDGRTWFVSGALAGEAVEARVLNARGKVVEARLERLLQAAPER 88

Query: 59  RDPVCRHFGPEGINGTCGGCSLQHLADQPYHAFKRELVVSAL-RSKGLTPPVDDLVICRP 117
           R+  CR++        CGGC+LQHL  +   A K+  +   L R  G+ P      +  P
Sbjct: 89  REAPCRYYD------RCGGCNLQHLPHEAQLALKQRTLAEQLQRVAGVQPEAWAAPLSGP 142

Query: 118 --GERRRAVFAARKTEKG--LLLGFSQANSHHIVAIEECPVTSPGIVSRFDAIRAIGLSM 173
             G RRRA  A R   K   L +GF    S  I+AI++C V    + S    +R +   +
Sbjct: 143 EFGYRRRARVAVRWDVKARQLEVGFRAEASQDIIAIDDCAVLVQPLQS---ILRHLPTVL 199

Query: 174 VANAEPFRITVLETLSGLD--ISVEGIKSVNDKQRRTLTETVLAMRGIARVSLSGEILIE 231
            + ++P  +  +E  SG    + V  +  +  + +  L       +  A++ L GE    
Sbjct: 200 RSLSKPQALGHVELFSGTAEAVLVRHVAPLPAEDQARLQ--AFCEQANAQLWLQGEGEPA 257

Query: 232 PQKPIIEFG------GIPVSPPAGGFTQATKQAEDAMAELMLAHVGKS--KRIADLFCGS 283
           P  P  + G       + ++   G F Q   Q   AM E  LA +     +R+ DLFCG 
Sbjct: 258 PVDPAAQLGFALAPWQLELAWRPGDFVQVNAQVNTAMIEQALAWLAPQADERVLDLFCGL 317

Query: 284 GTFALRLARIGR-VHAVEAEDKALKALDFAARNTQGLKPVSVEKRDLFRRPLMTS--ELK 340
           G FAL LAR  R V AVE     +      ARN   +      + DL  +PL  +    +
Sbjct: 318 GNFALPLARQAREVVAVEGVQAMVDRAAANARNNN-VHNARFFQADL-SQPLAGTGWAAE 375

Query: 341 NYDAVVFDPPRAGAEVQCKELARSTVKKIVAVSCNPLTLARDLAILTEGGYRVTRVTPVD 400
            + AV+ DPPR GA    + +AR   +++V VSCNP TLARD  +L   GYR+ R   +D
Sbjct: 376 GFSAVLLDPPRDGAFEVVQGIARLKARRLVYVSCNPATLARDAQVLVGQGYRLKRAGILD 435

Query: 401 QFLWSPHVEAVAVLE 415
            F  + HVEA+A+ E
Sbjct: 436 MFPQTAHVEAMALFE 450