Pairwise Alignments

Query, 416 a.a., RNA methyltransferase from Agrobacterium fabrum C58

Subject, 456 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Dickeya dianthicola 67-19

 Score =  134 bits (338), Expect = 4e-36
 Identities = 127/454 (27%), Positives = 190/454 (41%), Gaps = 66/454 (14%)

Query: 3   TQTVTIKSLGAQGDGIAHCPDGPVYVPFALPGETVAIAKVKDQ-----GTVMSITEASAD 57
           T TVT   L   G G+A      +++P  LPGE   +   +++       +  +   S +
Sbjct: 16  TLTVTANDLDPFGQGVARHQGKTLFIPGVLPGEQAEVQLTEEKRQFAHARLRRLLTTSEE 75

Query: 58  RRDPVCRHFGPEGINGTCGGCSLQHLADQPYHAFKRELVVSAL--RSKGLTPPVDDLVIC 115
           R  P C HF        CGGC  QH A QP     +   ++ L  R  G  PP  +++  
Sbjct: 76  RVTPRCPHFS------VCGGCQQQH-ASQPLQQRSKAAALTHLMTRETGAVPPEPEVIAE 128

Query: 116 RPGERRR----AVFAARKTEKG-----------LLLGFSQANSHHIVAIEECPVTSPGI- 159
                RR    A++   KT+             L +G+ QA SH +V I  CP+  P + 
Sbjct: 129 SAYAYRRRARLALYYQAKTQAKTQSKTQAKTHRLQMGYRQAGSHDLVDIAACPILCPELE 188

Query: 160 ---------VSRFDAIRAIGLSMVANAEPFRITVLETLSGLDISVEGIKSVNDKQRRTLT 210
                    + +  A+R +G   +  AE   + VL  L  L           D  R+ LT
Sbjct: 189 ALLAPLRDCLGQLQAVRRLGHVELVLAEQGPLVVLRHLDPL----------RDADRQALT 238

Query: 211 ETVLAMRGIARVSLSGEILIE---PQKPIIEFGGIPVSPPAGGFTQATKQAEDAMAELML 267
              + + G A  S      +E      P     G+ ++     F Q        M E  L
Sbjct: 239 AFAV-LHGTALFSAPEAGALECLHGDMPSYRIAGLSLAFSPRDFIQVNDGINQRMVEQAL 297

Query: 268 AHVGKSK--RIADLFCGSGTFALRLA-RIGRVHAVEAEDKAL-KALDFAARNTQGLKPVS 323
             +      R+ DLFCG G F L LA R G V  VE     + K  + A RN  GL  V+
Sbjct: 298 TWLDPQPQDRVLDLFCGMGNFTLPLAARAGSVVGVEGVAALVDKGRENARRN--GLTQVT 355

Query: 324 VEKRDL----FRRPLMTSELKNYDAVVFDPPRAGAEVQCKELARSTVKKIVAVSCNPLTL 379
               DL     R+P        +D ++ DP RAGA     ++ +   +++V +SCNP TL
Sbjct: 356 FYHHDLEADVTRQPWAAM---GFDKILLDPARAGASGVMPQIVKLAPRRVVYISCNPTTL 412

Query: 380 ARDLAILTEGGYRVTRVTPVDQFLWSPHVEAVAV 413
           ARD  +L   GYR+ R+  +D F  + H+E++A+
Sbjct: 413 ARDSKVLMAAGYRLARLAMLDMFPHTGHLESMAL 446