Pairwise Alignments

Query, 555 a.a., two component sensor kinase from Agrobacterium fabrum C58

Subject, 1616 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score = 79.3 bits (194), Expect = 1e-18
 Identities = 71/272 (26%), Positives = 115/272 (42%), Gaps = 30/272 (11%)

Query: 303  LKSKAVLIVSENTRFAEAAGQRLAAGGMDHAAVMSEDEQRAFIDVAASAGVGIDVVVVDA 362
            L+ + VL+V +N          +A          S  E    +  AA AG   ++V++D 
Sbjct: 1127 LRGRRVLVVDDNDNARTVLADLMAGMTFQVTTRASGLEAVDEVKRAAMAGTPYEIVLLDW 1186

Query: 363  QMS----------VACLDIAAAHGLPVVTIEEEE------------------IDASLMHY 394
            +M           +  L +  A  L +VT    E                  + AS++  
Sbjct: 1187 RMPGMDGIETAHHLMALGLDPAPRLLMVTAYGREEVLNLITEAGIEDVLIKPVSASILFD 1246

Query: 395  LAVGLKSSPKEKAEDEDWEIMTDDLPEMLRTGSVCDILLVEDNRVNQIVFSQILEGLGLS 454
              + L      +  D D    + ++   L T     ILLVEDN +NQ V +++L   G  
Sbjct: 1247 TIMRLFGCQPAEPRDVDGGHSSSEMH--LETIRGARILLVEDNDLNQQVATELLGDAGFQ 1304

Query: 455  WRLATSGEEALRLFVEQSPSVVLLDTTLGDIDGFEVAQRMRDLAGDKHIPIVGVITHAFE 514
              +A  G  AL      +  +VL+D  +  +DG    + +R L    H+PIV +  +A +
Sbjct: 1305 VDVADDGAIALAKVRRNAYDMVLMDMQMPVMDGVAATREIRRLGQFDHLPIVAMTANAMQ 1364

Query: 515  GDLDKCLASGMDDMLLKPVSPDMVEAVFLRLI 546
             D D+CL +GM+D + KP+ PD + A  LR I
Sbjct: 1365 RDRDRCLDAGMNDFITKPIDPDQLWAALLRWI 1396



 Score = 50.4 bits (119), Expect = 5e-10
 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 5/122 (4%)

Query: 431  ILLVEDNRVNQIVFSQILEGLGLSWRLATSGEEAL----RLFVEQSP-SVVLLDTTLGDI 485
            +L+V+DN   + V + ++ G+        SG EA+    R  +  +P  +VLLD  +  +
Sbjct: 1132 VLVVDDNDNARTVLADLMAGMTFQVTTRASGLEAVDEVKRAAMAGTPYEIVLLDWRMPGM 1191

Query: 486  DGFEVAQRMRDLAGDKHIPIVGVITHAFEGDLDKCLASGMDDMLLKPVSPDMVEAVFLRL 545
            DG E A  +  L  D    ++ V  +  E  L+    +G++D+L+KPVS  ++    +RL
Sbjct: 1192 DGIETAHHLMALGLDPAPRLLMVTAYGREEVLNLITEAGIEDVLIKPVSASILFDTIMRL 1251

Query: 546  IG 547
             G
Sbjct: 1252 FG 1253