Pairwise Alignments

Query, 239 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 245 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) from Variovorax sp. SCN45

 Score = 90.9 bits (224), Expect = 2e-23
 Identities = 76/225 (33%), Positives = 116/225 (51%), Gaps = 26/225 (11%)

Query: 29  VLRMTDGAEILLFNGRDGEWKAKLSFPSRKKISLVPLEQTRPQPDAAELHYLFAPLKVG- 87
           VLRM  G  + LF+G  GE+ A +    R  +++        + +A+   +L   +    
Sbjct: 28  VLRMQPGDALTLFDGAGGEYAATVERMGRSDVAVTVGAHQPVEREASRAVHLAVGMPANE 87

Query: 88  RMDYLVQKAVEMGAGLLQPVMTQHVQGKI--HNSEKLRAN----AIEAAEQCGILSLPEV 141
           RMD+LV+KA E+G   +QP+ T H   ++    +EK RA+    A+ A EQCG   +P V
Sbjct: 88  RMDWLVEKATELGVSSIQPLATAHGVLRLSGERAEKKRAHWEAIAVAACEQCGRNRVP-V 146

Query: 142 AEPVK-------LKEMLETWPEDRRIIYCDEGDAGQNPLPILQAVKERKIALLVGPEGGF 194
             PV+        ++       +R ++   +G  G   +  +Q    R + +L GPEGG 
Sbjct: 147 IHPVQTFSGWIAAQQQQGADTAERLVLSLADGTRG---IATVQPDDGRGVLVLSGPEGGL 203

Query: 195 S--EEERALLRSLAFVTPIPLGPRILRADTAAVAA---LAVIQAV 234
           S  EE+ A+ R  A   PI LG R+LRA+TAA+AA   LA +QAV
Sbjct: 204 SGTEEQEAIARGFA---PITLGSRVLRAETAALAALVSLAELQAV 245