Pairwise Alignments

Query, 239 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 248 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) from Sphingobium sp. HT1-2

 Score =  171 bits (433), Expect = 1e-47
 Identities = 95/236 (40%), Positives = 133/236 (56%), Gaps = 2/236 (0%)

Query: 3   RLFIEASLSEGVAQEATGEQFNYLANVLRMTDGAEILLFNGRDGEWKAKLSFPSRKKISL 62
           RL +E  L EGVA    G   +YL +V+R+     +LLF+G+ GEW A+     ++ + L
Sbjct: 14  RLHVETLLGEGVAVPVDGNGAHYLISVMRVKPDDIVLLFDGKSGEWAARARDIRKRDLVL 73

Query: 63  VPLEQTRPQPDAAELHYLFAPLKVGRMDYLVQKAVEMGAGLLQPVMTQHVQGKIHNSEKL 122
             + QT+P     +     AP+K GR+D + +KA E+G   LQPV+T+       N ++L
Sbjct: 74  ECVAQTKPPEVVPDFWLCCAPIKKGRIDLIAEKACELGVARLQPVLTRRAVVDKLNLDRL 133

Query: 123 RANAIEAAEQCGILSLPEVAEPVKLKEMLETWPEDRRIIYCDEGDAGQNPLPILQAVKER 182
            A+ +EAAEQCG  +LPE+ E VKL  +L+ W  +R + + DE   G   L         
Sbjct: 134 HAHLVEAAEQCGRTALPELTEMVKLDALLKGWSAERHLFFADE--TGGASLDETLRAHPG 191

Query: 183 KIALLVGPEGGFSEEERALLRSLAFVTPIPLGPRILRADTAAVAALAVIQAVIGDW 238
             A LVGPEGGF   ER  +R+     P+ LGPRILRA+TAA+AA A    V GDW
Sbjct: 192 PAAFLVGPEGGFDPAEREAIRATPGAVPVSLGPRILRAETAAIAATAAWMTVNGDW 247