Pairwise Alignments

Query, 433 a.a., flagellar motor protein, PAL/OmpA family from Agrobacterium fabrum C58

Subject, 346 a.a., Flagellar motor rotation protein from Pseudomonas putida KT2440

 Score = 77.4 bits (189), Expect = 6e-19
 Identities = 39/65 (60%), Positives = 48/65 (73%), Gaps = 1/65 (1%)

Query: 12 NEIIIVKRHKGGHDGAHGGAWKIAYADFMTAMMAFFLVMWLVNAANEETKASVASYF-NP 70
          N+ IIVKR K    G HGGAWKIA+ADF TAMMAFFLV+WL++ A  E K ++A YF +P
Sbjct: 4  NQPIIVKRVKRFGGGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYFQDP 63

Query: 71 IKLSD 75
          I  S+
Sbjct: 64 IGFSE 68



 Score = 74.7 bits (182), Expect = 4e-18
 Identities = 56/196 (28%), Positives = 97/196 (49%), Gaps = 12/196 (6%)

Query: 242 GKSMEIA---AVVPQQRPDAAEQAALAKPNPDQASKASDAEWEKADTLREEIEKQI--SG 296
           G S E+A    + P+ + +  +Q+          + A   E E+ + L +E++ ++  + 
Sbjct: 78  GGSPEMAPDKTINPEVKTEPTQQSPTQLSKDQVETMAEQVERERLELLLQELQNKVEENP 137

Query: 297 ITGKLSEGLVVTPAEGGLLLTISDQAETPMFNIGSAVPRG---ELVLAMEKIGKLLQERG 353
              K  + ++    + GL + I D    PMF+IGSA  +    +++LAM    K +  + 
Sbjct: 138 QLQKFKDQILFEITQDGLRIQIMDAENRPMFDIGSARLQPYFEDILLAMADTIKAVPNK- 196

Query: 354 GSVVIRGHTDGRQFKGEAN-DNWRLSMDRAHSAYYMLVRGGLSEERVKQVSGFADRRLQV 412
             V I GHTD + + G     NW LS +RA++A   LV GG  + +V +V G+A   L  
Sbjct: 197 --VSISGHTDAKPYAGTGEYGNWELSANRANAARRALVAGGYPDGQVARVVGYASSSLFD 254

Query: 413 PSNPLADANRRIEILL 428
             +P    NRRI+I++
Sbjct: 255 RKDPFNPVNRRIDIIV 270