Pairwise Alignments

Query, 306 a.a., flagella associated protein from Agrobacterium fabrum C58

Subject, 430 a.a., flagellin protein FlaD from Agrobacterium fabrum C58

 Score =  198 bits (504), Expect = 2e-55
 Identities = 125/274 (45%), Positives = 160/274 (58%), Gaps = 36/274 (13%)

Query: 1   MASILTNNNAMAALSTLRSIASDLSTTQDRISSGLKVGSASDNAAYWSIATTMRSDNKAL 60
           M SILTN  AMAAL TLR I  +L TTQ R+SSG +V +A+DNAAYWSIATTMRSDN AL
Sbjct: 1   MTSILTNAAAMAALQTLRMIDKNLETTQARVSSGFRVETAADNAAYWSIATTMRSDNSAL 60

Query: 61  GAVSDALGMGAAKVDTASAGMDAAIKVVTDIKAKVVAAKEQGVDKTKVQEEVSQLLDQLK 120
            AV DALG+GAAKVDTA   +++ I+VV  IKAK+VAA   G D+ K+Q+E+ QL +QLK
Sbjct: 61  SAVQDALGLGAAKVDTAYDALESTIEVVKQIKAKLVAAYGVGADRGKIQDEIKQLQEQLK 120

Query: 121 SIGTSASFNGENWLVSS----------ANATKTVVSGFVRDAGGTVSVKTTDYALDANSM 170
           SI  SASF+GENWL +S           + TK VV+ F R   G V V T DY LD++++
Sbjct: 121 SISESASFSGENWLQASISNSGTPPVAESITKKVVASFTRTGSGNVGVTTVDYTLDSSTV 180

Query: 171 LY--TEGTPGTIDANSGILNATGA----TTTVGAKTY-----------TQISVL------ 207
           L+  + G  G +D N+  ++ T      T+T   KT             QI  L      
Sbjct: 181 LFDLSGGKLGILDKNAVFVSKTETEVMQTSTTAGKTSQAGYVVEKLSDAQIGALNATTTD 240

Query: 208 ---DMNVGTDDLDNALYSVETALTKMTSAGAKLG 238
              D N+ ++  DN L   E    K T+     G
Sbjct: 241 TNTDPNLYSNGTDNYLRLAENVWVKATATNPSSG 274



 Score =  117 bits (294), Expect = 4e-31
 Identities = 97/281 (34%), Positives = 131/281 (46%), Gaps = 42/281 (14%)

Query: 33  SGLKVGSASDNAAYWSIATTMRSDNKALGAVSDALGMGAAKVDTASAGMDAAIKVVTDIK 92
           SG K+G    NA + S   T           +   G    K+  A  G   A    T+  
Sbjct: 185 SGGKLGILDKNAVFVSKTETEVMQTSTTAGKTSQAGYVVEKLSDAQIGALNATTTDTNTD 244

Query: 93  AKVVAAKEQGVDK-TKVQEEVSQLLDQLKSIGTSASFNGENWLVSSANATKTVVSGFVRD 151
             + +    G D   ++ E V      +K+  T+ S  G            T VS   RD
Sbjct: 245 PNLYS---NGTDNYLRLAENV-----WVKATATNPSSGG------------TTVSPAYRD 284

Query: 152 AGGTVSVKTTDYALDANSMLYTEG-----TPGTID-ANSGILNATGATTTVGAKTYTQIS 205
            G      +TD+  D ++   +       +  T+D  N  ++ A       G  TYT   
Sbjct: 285 TG------STDWFYDVSAGTASANRSLGFSVSTLDLGNLDVVAAAMGGFAGGGTTYT--- 335

Query: 206 VLDMNVGTDDLDNALYSVETALTKMTSAGAKLGSLSARIDLQSGFADKLSDTIEKGVGRL 265
                 G D +D  +  V+  L  MTS  + LGSL +RI +Q  F   L D I+KGVGRL
Sbjct: 336 ------GADAIDMMMSFVDKQLEAMTSTASSLGSLQSRISMQENFVSSLMDVIDKGVGRL 389

Query: 266 VDADMNEESTKLKALQTQQQLAIQALSIANSDSQNILSLFR 306
           VDADMNEEST+LKALQTQQQL IQALSIAN++++NIL LF+
Sbjct: 390 VDADMNEESTRLKALQTQQQLGIQALSIANANAENILQLFK 430